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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 259.6
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 446.2
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 337.7
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 399.2
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 355.5
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 284
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 369
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 583.5
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 127.5
Min RPKM: 1.5
Std RPKM: 30.4
Median RPKM: 46.5
GTEX-PX3G-0826-SM-48TZS
20-29 years, female
127.5
GTEX-ZYT6-0626-SM-5E45V
30-39 years, male
124.8
GTEX-1399R-1226-SM-5P9GF
30-39 years, male
113.1
GTEX-ZF2S-3026-SM-4WWCH
50-59 years, female
110.7
GTEX-13VXU-0926-SM-5IFFH
50-59 years, male
100.9
GTEX-SJXC-1226-SM-4DM78
60-69 years, male
100.7
GTEX-11NV4-1326-SM-5HL6V
60-69 years, male
99.0
GTEX-14AS3-0126-SM-5Q5F4
40-49 years, female
98.4
GTEX-11NUK-1226-SM-5P9GM
50-59 years, male
96.4
GTEX-T6MN-1226-SM-3NMA5
50-59 years, male
95.3
GTEX-11OF3-0726-SM-5BC4Z
60-69 years, male
92.6
GTEX-1399T-0826-SM-5IFES
60-69 years, male
91.9
GTEX-14DAQ-1726-SM-5S2R2
60-69 years, female
91.3
GTEX-11DXZ-0126-SM-5EGGY
50-59 years, male
89.4
GTEX-131YS-1626-SM-5HL6C
60-69 years, female
88.0
GTEX-11WQC-0726-SM-5EQMR
60-69 years, male
87.6
GTEX-QESD-2026-SM-447BI
20-29 years, male
86.5
GTEX-145MF-0826-SM-5QGQA
50-59 years, male
86.2
GTEX-13SLX-1226-SM-5S2Q6
50-59 years, female
85.6
GTEX-YECK-1926-SM-4W21H
60-69 years, male
85.3
GTEX-13OW6-2626-SM-5IFF2
50-59 years, male
84.0
GTEX-13112-1426-SM-5EGH8
50-59 years, male
83.7
GTEX-1212Z-0226-SM-59HLF
60-69 years, male
81.9
GTEX-11DXY-0526-SM-5EGGQ
60-69 years, male
80.1
GTEX-13FTZ-0726-SM-5IFFY
60-69 years, male
77.9
GTEX-RN64-1826-SM-48FDV
50-59 years, male
76.7
GTEX-QEG4-1826-SM-4R1JN
30-39 years, male
71.7
GTEX-147JS-1126-SM-5RQIW
60-69 years, male
71.4
GTEX-ZVT3-1626-SM-5GU66
60-69 years, female
71.4
GTEX-13FLV-0326-SM-5N9DJ
50-59 years, male
71.1
GTEX-U3ZN-0226-SM-3DB8D
30-39 years, female
68.9
GTEX-145LU-1326-SM-5LU9N
50-59 years, male
68.7
GTEX-R53T-0326-SM-48FEC
50-59 years, female
64.4
GTEX-WZTO-0626-SM-4PQYY
40-49 years, male
63.1
GTEX-14E1K-0326-SM-5S2PE
50-59 years, male
59.7
GTEX-11ZUS-2526-SM-59872
30-39 years, male
58.7
GTEX-12WSD-1426-SM-5GCN9
60-69 years, female
58.4
GTEX-QV44-0326-SM-4R1KD
50-59 years, male
58.2
GTEX-Y5V5-0926-SM-4VBPZ
60-69 years, female
58.1
GTEX-WYVS-1926-SM-4PQZ2
40-49 years, female
56.5
GTEX-13FTW-1126-SM-5J2NV
40-49 years, male
56.0
GTEX-147F4-1426-SM-5LUA8
50-59 years, male
55.8
GTEX-TKQ2-1726-SM-4DXUP
50-59 years, male
55.8
GTEX-RNOR-1426-SM-48FDJ
50-59 years, female
55.7
GTEX-12WSI-0226-SM-5GCNA
50-59 years, male
55.2
GTEX-RWSA-1426-SM-47JXA
40-49 years, male
55.1
GTEX-14753-1626-SM-5NQ9L
60-69 years, male
54.6
GTEX-XOTO-0826-SM-4B65O
50-59 years, male
54.6
GTEX-ZAB5-0426-SM-5CVMI
50-59 years, male
54.2
GTEX-11ZTS-1426-SM-5EQMM
60-69 years, female
53.1
GTEX-P78B-1326-SM-3P611
40-49 years, female
52.8
GTEX-13NYB-1026-SM-5IFH3
40-49 years, male
52.6
GTEX-ZZPU-0426-SM-5GZYH
50-59 years, female
50.5
GTEX-RM2N-1926-SM-48FCU
50-59 years, male
50.0
GTEX-139TS-1426-SM-5IFJD
60-69 years, male
49.8
GTEX-ZPU1-0826-SM-57WG2
40-49 years, male
48.8
GTEX-11ZVC-0726-SM-5FQT9
50-59 years, female
47.2
GTEX-131XH-0626-SM-5LZWH
50-59 years, male
47.0
GTEX-UPIC-0926-SM-4IHLV
20-29 years, female
46.6
GTEX-132NY-0926-SM-5P9G3
60-69 years, male
46.5
GTEX-OOBJ-0826-SM-3NB2K
60-69 years, male
44.8
GTEX-X3Y1-2726-SM-4PQZH
40-49 years, male
44.4
GTEX-Q2AG-1126-SM-48U1P
40-49 years, female
42.9
GTEX-12WSM-0726-SM-5GCOW
60-69 years, male
41.6
GTEX-RU72-1426-SM-46MUF
50-59 years, female
39.0
GTEX-XBEC-1526-SM-4AT68
50-59 years, male
39.0
GTEX-11EQ9-0526-SM-5A5JZ
30-39 years, male
38.9
GTEX-ZVP2-0626-SM-51MSO
50-59 years, male
38.0
GTEX-Y5LM-0426-SM-4VBRO
40-49 years, female
37.0
GTEX-X4EO-1126-SM-4QARQ
60-69 years, female
36.9
GTEX-12696-0826-SM-5EGGE
60-69 years, male
36.6
GTEX-12KS4-1326-SM-5LUB3
30-39 years, male
36.3
GTEX-UPK5-1426-SM-4JBHH
40-49 years, male
35.5
GTEX-11GSP-0626-SM-5986T
60-69 years, female
35.4
GTEX-139TU-0826-SM-5IJFG
60-69 years, male
34.8
GTEX-S33H-1626-SM-4AD68
30-39 years, male
34.7
GTEX-ZVT4-0626-SM-5E45T
50-59 years, female
33.9
GTEX-13PVR-0126-SM-5S2PY
60-69 years, female
33.0
GTEX-13NZ9-1326-SM-5MR3V
50-59 years, male
32.7
GTEX-S4Z8-0526-SM-4AD4T
60-69 years, male
32.6
GTEX-YB5E-0326-SM-5IFHU
40-49 years, male
32.2
GTEX-ZF29-2026-SM-4WWB7
60-69 years, female
31.2
GTEX-WFON-1726-SM-4LVMQ
40-49 years, male
30.3
GTEX-YFC4-1526-SM-5IFJS
40-49 years, female
28.6
GTEX-13O3O-1826-SM-5IFGW
60-69 years, female
28.5
GTEX-X261-1726-SM-4PQYT
50-59 years, male
28.4
GTEX-13N11-0926-SM-5IJG2
50-59 years, female
28.1
GTEX-14A5I-1726-SM-5QGQ5
50-59 years, female
25.6
GTEX-13N2G-0926-SM-5IFGJ
60-69 years, male
24.4
GTEX-Q734-0326-SM-48U15
40-49 years, female
24.2
GTEX-12ZZZ-1326-SM-59HKW
60-69 years, male
23.2
GTEX-1269C-0626-SM-5FQSS
60-69 years, female
22.8
GTEX-Z9EW-0426-SM-5CVM9
40-49 years, male
22.5
GTEX-146FH-1526-SM-5NQBU
50-59 years, female
21.7
GTEX-VUSG-0126-SM-4KL1X
50-59 years, male
20.7
GTEX-YEC4-0826-SM-5P9FV
40-49 years, male
19.8
GTEX-RTLS-1326-SM-46MUN
60-69 years, female
19.5
GTEX-13NZB-0626-SM-5IFH6
30-39 years, male
16.8
GTEX-145MO-2326-SM-5NQ9K
60-69 years, male
15.6
GTEX-WQUQ-1926-SM-4OOSA
60-69 years, male
14.7
GTEX-13113-1326-SM-5GCOI
60-69 years, female
13.0
GTEX-12WSL-0226-SM-5CVMJ
50-59 years, male
12.7
GTEX-13QJC-0726-SM-5RQJK
60-69 years, female
11.2
GTEX-1497J-0726-SM-5Q5D1
60-69 years, male
11.2
GTEX-UTHO-2426-SM-4JBHD
60-69 years, male
10.5
GTEX-X4EP-1026-SM-4QAS5
60-69 years, female
10.5
GTEX-QEL4-1226-SM-447A4
50-59 years, male
10.0
GTEX-139YR-0226-SM-5IFEM
50-59 years, male
9.6
GTEX-REY6-1226-SM-48FDR
60-69 years, male
9.1
GTEX-S32W-1926-SM-4AD63
50-59 years, female
6.2
GTEX-144GM-1326-SM-5LU5E
20-29 years, male
4.2
GTEX-QDVN-0826-SM-48TZ2
50-59 years, male
4.1
GTEX-ZAB4-0826-SM-5LU9D
40-49 years, male
4.1
GTEX-12WSG-0626-SM-5FQTQ
50-59 years, female
3.7
GTEX-ZYY3-0626-SM-5NQ6W
60-69 years, female
3.7
GTEX-ZTPG-1426-SM-51MT3
20-29 years, female
3.3
GTEX-X4XY-1626-SM-46MVN
60-69 years, male
2.6
GTEX-131XE-0326-SM-5LZVO
50-59 years, male
1.7
GTEX-14C38-1526-SM-5RQJ7
50-59 years, male
1.5
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.