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RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 115.8
Min RPKM: 0.0
Std RPKM: 30.6
Median RPKM: 21.0
GTEX-1122O-1326-SM-5H11F
60-69 years, female
115.8
GTEX-ZPCL-1726-SM-57WEO
60-69 years, female
110.9
GTEX-111YS-1426-SM-5GID8
60-69 years, male
109.5
GTEX-YEC4-1726-SM-4W21E
40-49 years, male
103.2
GTEX-13D11-0726-SM-5LZZB
50-59 years, female
94.1
GTEX-Y9LG-1626-SM-5IFHM
30-39 years, male
90.8
GTEX-ZLV1-1126-SM-4WWBW
60-69 years, female
89.3
GTEX-11I78-1126-SM-5A5K5
50-59 years, female
83.2
GTEX-YF7O-1826-SM-5IFIU
50-59 years, male
78.9
GTEX-1399S-2026-SM-5KM4B
30-39 years, female
72.0
GTEX-YB5E-1526-SM-5IFIE
40-49 years, male
67.4
GTEX-14DAR-1426-SM-5RQIR
50-59 years, male
67.3
GTEX-ZTSS-0926-SM-59865
40-49 years, male
65.7
GTEX-ZVZP-1826-SM-5GZXB
50-59 years, male
64.5
GTEX-ZYWO-1526-SM-5SIAL
40-49 years, female
63.4
GTEX-11EQ9-1326-SM-5985X
30-39 years, male
62.6
GTEX-145LT-1026-SM-5LU9O
40-49 years, male
62.6
GTEX-ZZ64-0526-SM-5GZXM
20-29 years, male
59.5
GTEX-XXEK-1026-SM-4BRUW
50-59 years, male
57.2
GTEX-ZYFG-2026-SM-5E43Y
60-69 years, female
53.0
GTEX-X5EB-1626-SM-4E3IV
40-49 years, male
52.1
GTEX-11P82-0826-SM-5P9GU
20-29 years, male
51.9
GTEX-14E6E-1626-SM-5RQI7
30-39 years, male
50.7
GTEX-131XF-1326-SM-5GCMQ
60-69 years, male
50.3
GTEX-XGQ4-1326-SM-4GIDU
50-59 years, male
48.5
GTEX-11P7K-1626-SM-5GU63
30-39 years, male
48.2
GTEX-11DXX-1626-SM-5H11H
60-69 years, female
48.1
GTEX-13PL7-2626-SM-5IFH4
60-69 years, female
47.4
GTEX-XUZC-1426-SM-4BRV3
30-39 years, female
43.3
GTEX-WQUQ-2426-SM-4MVNW
60-69 years, male
41.5
GTEX-13113-1226-SM-5EGHT
60-69 years, female
38.9
GTEX-ZTPG-2626-SM-57WFX
20-29 years, female
35.2
GTEX-11DXZ-1326-SM-5H11X
50-59 years, male
34.8
GTEX-ZA64-1226-SM-5HL7B
20-29 years, male
33.5
GTEX-13CF3-1226-SM-5LZXN
60-69 years, female
32.4
GTEX-Y114-1426-SM-4TT6W
50-59 years, female
31.6
GTEX-ZEX8-1826-SM-57WBH
50-59 years, male
30.8
GTEX-ZXES-1526-SM-5NQ95
30-39 years, female
29.2
GTEX-12BJ1-1926-SM-5HL9Z
60-69 years, male
27.7
GTEX-13FH7-1226-SM-5IJFK
50-59 years, female
27.1
GTEX-133LE-1426-SM-5IFH1
20-29 years, female
25.8
GTEX-WFJO-0926-SM-4LVM2
30-39 years, male
24.0
GTEX-13O61-1326-SM-5KM31
60-69 years, male
23.1
GTEX-ZPIC-2326-SM-57WDW
40-49 years, female
22.3
GTEX-XBED-1426-SM-4AT4G
60-69 years, male
19.6
GTEX-1399R-2026-SM-5K7WN
30-39 years, male
19.5
GTEX-139YR-2226-SM-5IFFW
50-59 years, male
19.3
GTEX-11XUK-1426-SM-5EQMG
40-49 years, female
19.2
GTEX-11NSD-1726-SM-5N9C3
20-29 years, male
19.1
GTEX-ZTX8-0526-SM-59HLD
20-29 years, male
19.1
GTEX-13FTW-2026-SM-5IJE2
40-49 years, male
16.6
GTEX-ZLFU-1526-SM-4WWBT
40-49 years, male
16.6
GTEX-WFG7-1726-SM-4LVME
20-29 years, male
15.1
GTEX-VJYA-0926-SM-4KL1N
60-69 years, male
14.7
GTEX-ZVT2-2126-SM-5NQ93
50-59 years, female
13.9
GTEX-WH7G-1626-SM-4LVMY
40-49 years, male
13.6
GTEX-13RTK-0826-SM-5Q5C6
20-29 years, male
13.4
GTEX-139T6-1026-SM-5IJGC
50-59 years, male
11.9
GTEX-13O21-1026-SM-5IJDU
50-59 years, male
11.3
GTEX-1399U-2126-SM-5IFEZ
50-59 years, female
10.6
GTEX-ZVP2-1726-SM-5GU5P
50-59 years, male
10.4
GTEX-XAJ8-0526-SM-47JYK
40-49 years, male
9.8
GTEX-11VI4-1626-SM-5EQKO
40-49 years, female
7.6
GTEX-Z9EW-0926-SM-5CVMM
40-49 years, male
7.4
GTEX-Y3IK-1726-SM-4YCCR
50-59 years, female
6.4
GTEX-WRHK-1026-SM-4MVOD
20-29 years, female
5.2
GTEX-145ME-0926-SM-5O9AR
40-49 years, female
4.3
GTEX-12WSK-1526-SM-5CVNO
40-49 years, female
4.2
GTEX-ZF2S-1726-SM-57WFT
50-59 years, female
3.5
GTEX-13OVI-1926-SM-5IJCG
60-69 years, female
3.2
GTEX-111CU-1326-SM-5NQ8L
50-59 years, male
2.7
GTEX-ZQUD-0926-SM-57WE3
30-39 years, male
2.5
GTEX-X15G-1426-SM-4PQZK
50-59 years, female
2.3
GTEX-117YX-0326-SM-5GICL
50-59 years, male
1.0
GTEX-13QBU-1926-SM-5IJEW
40-49 years, female
0.8
GTEX-ZP4G-1626-SM-57WGD
20-29 years, female
0.8
GTEX-148VJ-2226-SM-5NQ9M
70-79 years, male
0.3
GTEX-VUSG-1726-SM-4KKZL
50-59 years, male
0.3
GTEX-131XG-1726-SM-5LZUR
50-59 years, female
0.2
GTEX-1192X-2526-SM-59868
50-59 years, male
0.1
GTEX-WEY5-1526-SM-4LMJF
40-49 years, female
0.1
GTEX-XMK1-1826-SM-4B66F
40-49 years, male
0.1
GTEX-Y5LM-1626-SM-4VDTB
40-49 years, female
0.1
GTEX-13111-1426-SM-5DUW3
50-59 years, male
0.0
GTEX-UPK5-2026-SM-4JBIM
40-49 years, male
0.0
GTEX-WFG8-1626-SM-4LVMB
20-29 years, male
0.0
GTEX-ZC5H-2326-SM-4WAYT
40-49 years, female
0.0
GTEX-ZQG8-2526-SM-57WEQ
60-69 years, female
0.0
Show all
SMALL INTESTINE - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.