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RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 16
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 12
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 8.9
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 11.2
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 48.8
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 20.2
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 17.1
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 30.9
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 335.4
Min RPKM: 1.4
Std RPKM: 41.6
Median RPKM: 16.5
GTEX-144GM-1326-SM-5LU5E
20-29 years, male
335.4
GTEX-14753-1626-SM-5NQ9L
60-69 years, male
184.2
GTEX-RM2N-1926-SM-48FCU
50-59 years, male
158.9
GTEX-RWSA-1426-SM-47JXA
40-49 years, male
137.9
GTEX-131XE-0326-SM-5LZVO
50-59 years, male
130.2
GTEX-14C38-1526-SM-5RQJ7
50-59 years, male
113.4
GTEX-13O3O-1826-SM-5IFGW
60-69 years, female
100.2
GTEX-ZVT4-0626-SM-5E45T
50-59 years, female
96.3
GTEX-X4XY-1626-SM-46MVN
60-69 years, male
93.6
GTEX-ZTPG-1426-SM-51MT3
20-29 years, female
72.1
GTEX-1212Z-0226-SM-59HLF
60-69 years, male
62.2
GTEX-13SLX-1226-SM-5S2Q6
50-59 years, female
57.3
GTEX-XOTO-0826-SM-4B65O
50-59 years, male
55.8
GTEX-VUSG-0126-SM-4KL1X
50-59 years, male
47.7
GTEX-ZAB4-0826-SM-5LU9D
40-49 years, male
45.1
GTEX-REY6-1226-SM-48FDR
60-69 years, male
43.5
GTEX-ZPU1-0826-SM-57WG2
40-49 years, male
42.6
GTEX-12WSG-0626-SM-5FQTQ
50-59 years, female
42.1
GTEX-QESD-2026-SM-447BI
20-29 years, male
40.6
GTEX-145MO-2326-SM-5NQ9K
60-69 years, male
38.7
GTEX-X4EO-1126-SM-4QARQ
60-69 years, female
38.6
GTEX-TKQ2-1726-SM-4DXUP
50-59 years, male
37.9
GTEX-QEL4-1226-SM-447A4
50-59 years, male
33.1
GTEX-11GSP-0626-SM-5986T
60-69 years, female
33.0
GTEX-139YR-0226-SM-5IFEM
50-59 years, male
32.4
GTEX-12WSD-1426-SM-5GCN9
60-69 years, female
31.5
GTEX-132NY-0926-SM-5P9G3
60-69 years, male
29.7
GTEX-13FLV-0326-SM-5N9DJ
50-59 years, male
29.1
GTEX-UTHO-2426-SM-4JBHD
60-69 years, male
28.9
GTEX-12696-0826-SM-5EGGE
60-69 years, male
28.2
GTEX-147JS-1126-SM-5RQIW
60-69 years, male
27.0
GTEX-131YS-1626-SM-5HL6C
60-69 years, female
26.9
GTEX-X4EP-1026-SM-4QAS5
60-69 years, female
26.6
GTEX-WFON-1726-SM-4LVMQ
40-49 years, male
26.5
GTEX-14A5I-1726-SM-5QGQ5
50-59 years, female
26.4
GTEX-Q2AG-1126-SM-48U1P
40-49 years, female
24.6
GTEX-139TU-0826-SM-5IJFG
60-69 years, male
24.3
GTEX-13FTW-1126-SM-5J2NV
40-49 years, male
23.7
GTEX-12KS4-1326-SM-5LUB3
30-39 years, male
22.9
GTEX-145LU-1326-SM-5LU9N
50-59 years, male
22.9
GTEX-14DAQ-1726-SM-5S2R2
60-69 years, female
22.9
GTEX-Y5V5-0926-SM-4VBPZ
60-69 years, female
22.1
GTEX-13QJC-0726-SM-5RQJK
60-69 years, female
21.9
GTEX-YEC4-0826-SM-5P9FV
40-49 years, male
21.4
GTEX-WYVS-1926-SM-4PQZ2
40-49 years, female
20.7
GTEX-14E1K-0326-SM-5S2PE
50-59 years, male
20.5
GTEX-1269C-0626-SM-5FQSS
60-69 years, female
20.2
GTEX-147F4-1426-SM-5LUA8
50-59 years, male
19.8
GTEX-UPK5-1426-SM-4JBHH
40-49 years, male
18.6
GTEX-14AS3-0126-SM-5Q5F4
40-49 years, female
18.1
GTEX-QV44-0326-SM-4R1KD
50-59 years, male
18.1
GTEX-11NUK-1226-SM-5P9GM
50-59 years, male
17.9
GTEX-145MF-0826-SM-5QGQA
50-59 years, male
17.7
GTEX-13NYB-1026-SM-5IFH3
40-49 years, male
17.6
GTEX-13PVR-0126-SM-5S2PY
60-69 years, female
16.9
GTEX-RU72-1426-SM-46MUF
50-59 years, female
16.9
GTEX-Q734-0326-SM-48U15
40-49 years, female
16.7
GTEX-S4Z8-0526-SM-4AD4T
60-69 years, male
16.7
GTEX-11ZVC-0726-SM-5FQT9
50-59 years, female
16.5
GTEX-X261-1726-SM-4PQYT
50-59 years, male
16.5
GTEX-ZVP2-0626-SM-51MSO
50-59 years, male
16.4
GTEX-13NZB-0626-SM-5IFH6
30-39 years, male
16.2
GTEX-RTLS-1326-SM-46MUN
60-69 years, female
16.1
GTEX-ZVT3-1626-SM-5GU66
60-69 years, female
15.9
GTEX-ZYT6-0626-SM-5E45V
30-39 years, male
15.8
GTEX-WQUQ-1926-SM-4OOSA
60-69 years, male
15.4
GTEX-13112-1426-SM-5EGH8
50-59 years, male
15.0
GTEX-13FTZ-0726-SM-5IFFY
60-69 years, male
15.0
GTEX-ZF2S-3026-SM-4WWCH
50-59 years, female
14.7
GTEX-ZYY3-0626-SM-5NQ6W
60-69 years, female
14.5
GTEX-YB5E-0326-SM-5IFHU
40-49 years, male
14.4
GTEX-OOBJ-0826-SM-3NB2K
60-69 years, male
14.2
GTEX-ZF29-2026-SM-4WWB7
60-69 years, female
14.2
GTEX-ZAB5-0426-SM-5CVMI
50-59 years, male
14.1
GTEX-PX3G-0826-SM-48TZS
20-29 years, female
13.8
GTEX-146FH-1526-SM-5NQBU
50-59 years, female
13.7
GTEX-SJXC-1226-SM-4DM78
60-69 years, male
13.6
GTEX-YECK-1926-SM-4W21H
60-69 years, male
13.6
GTEX-11DXZ-0126-SM-5EGGY
50-59 years, male
13.4
GTEX-S32W-1926-SM-4AD63
50-59 years, female
12.9
GTEX-S33H-1626-SM-4AD68
30-39 years, male
12.8
GTEX-XBEC-1526-SM-4AT68
50-59 years, male
12.8
GTEX-13N2G-0926-SM-5IFGJ
60-69 years, male
12.5
GTEX-11OF3-0726-SM-5BC4Z
60-69 years, male
12.4
GTEX-YFC4-1526-SM-5IFJS
40-49 years, female
12.4
GTEX-Z9EW-0426-SM-5CVM9
40-49 years, male
12.3
GTEX-12WSL-0226-SM-5CVMJ
50-59 years, male
12.1
GTEX-QDVN-0826-SM-48TZ2
50-59 years, male
12.1
GTEX-1497J-0726-SM-5Q5D1
60-69 years, male
11.8
GTEX-UPIC-0926-SM-4IHLV
20-29 years, female
11.4
GTEX-13113-1326-SM-5GCOI
60-69 years, female
11.3
GTEX-11ZTS-1426-SM-5EQMM
60-69 years, female
11.0
GTEX-12WSM-0726-SM-5GCOW
60-69 years, male
11.0
GTEX-T6MN-1226-SM-3NMA5
50-59 years, male
10.8
GTEX-13OW6-2626-SM-5IFF2
50-59 years, male
10.7
GTEX-13NZ9-1326-SM-5MR3V
50-59 years, male
9.8
GTEX-RNOR-1426-SM-48FDJ
50-59 years, female
9.5
GTEX-11WQC-0726-SM-5EQMR
60-69 years, male
9.3
GTEX-R53T-0326-SM-48FEC
50-59 years, female
9.1
GTEX-QEG4-1826-SM-4R1JN
30-39 years, male
8.9
GTEX-WZTO-0626-SM-4PQYY
40-49 years, male
8.9
GTEX-13VXU-0926-SM-5IFFH
50-59 years, male
8.6
GTEX-11DXY-0526-SM-5EGGQ
60-69 years, male
8.5
GTEX-139TS-1426-SM-5IFJD
60-69 years, male
8.1
GTEX-1399T-0826-SM-5IFES
60-69 years, male
7.7
GTEX-P78B-1326-SM-3P611
40-49 years, female
7.7
GTEX-RN64-1826-SM-48FDV
50-59 years, male
7.7
GTEX-12WSI-0226-SM-5GCNA
50-59 years, male
7.4
GTEX-X3Y1-2726-SM-4PQZH
40-49 years, male
7.4
GTEX-13N11-0926-SM-5IJG2
50-59 years, female
7.3
GTEX-11NV4-1326-SM-5HL6V
60-69 years, male
6.1
GTEX-U3ZN-0226-SM-3DB8D
30-39 years, female
5.6
GTEX-131XH-0626-SM-5LZWH
50-59 years, male
5.3
GTEX-12ZZZ-1326-SM-59HKW
60-69 years, male
4.7
GTEX-ZZPU-0426-SM-5GZYH
50-59 years, female
4.6
GTEX-Y5LM-0426-SM-4VBRO
40-49 years, female
4.4
GTEX-1399R-1226-SM-5P9GF
30-39 years, male
4.1
GTEX-11EQ9-0526-SM-5A5JZ
30-39 years, male
3.8
GTEX-11ZUS-2526-SM-59872
30-39 years, male
1.4
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.
The Human Protein Atlas project is funded
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Female, age 60
