We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 680.8
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 174.3
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 153.6
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 410
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 329.2
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 1127
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 499.1
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 1378.5
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 2002.9
Min RPKM: 180.6
Std RPKM: 366.3
Median RPKM: 940.5
GTEX-13SLX-1226-SM-5S2Q6
50-59 years, female
2002.9
GTEX-YECK-1926-SM-4W21H
60-69 years, male
1805.0
GTEX-R53T-0326-SM-48FEC
50-59 years, female
1770.8
GTEX-ZYT6-0626-SM-5E45V
30-39 years, male
1662.6
GTEX-14AS3-0126-SM-5Q5F4
40-49 years, female
1615.3
GTEX-T6MN-1226-SM-3NMA5
50-59 years, male
1557.1
GTEX-RTLS-1326-SM-46MUN
60-69 years, female
1523.9
GTEX-14DAQ-1726-SM-5S2R2
60-69 years, female
1510.6
GTEX-11NUK-1226-SM-5P9GM
50-59 years, male
1456.0
GTEX-139TS-1426-SM-5IFJD
60-69 years, male
1444.7
GTEX-UPIC-0926-SM-4IHLV
20-29 years, female
1444.7
GTEX-SJXC-1226-SM-4DM78
60-69 years, male
1422.5
GTEX-13OW6-2626-SM-5IFF2
50-59 years, male
1414.1
GTEX-131YS-1626-SM-5HL6C
60-69 years, female
1412.3
GTEX-RNOR-1426-SM-48FDJ
50-59 years, female
1398.6
GTEX-13FLV-0326-SM-5N9DJ
50-59 years, male
1388.8
GTEX-Q2AG-1126-SM-48U1P
40-49 years, female
1364.6
GTEX-ZVT3-1626-SM-5GU66
60-69 years, female
1362.4
GTEX-11NV4-1326-SM-5HL6V
60-69 years, male
1312.9
GTEX-XBEC-1526-SM-4AT68
50-59 years, male
1304.6
GTEX-11DXY-0526-SM-5EGGQ
60-69 years, male
1301.2
GTEX-1212Z-0226-SM-59HLF
60-69 years, male
1301.0
GTEX-145MF-0826-SM-5QGQA
50-59 years, male
1287.9
GTEX-RN64-1826-SM-48FDV
50-59 years, male
1273.6
GTEX-13QJC-0726-SM-5RQJK
60-69 years, female
1268.6
GTEX-RWSA-1426-SM-47JXA
40-49 years, male
1260.7
GTEX-11OF3-0726-SM-5BC4Z
60-69 years, male
1256.8
GTEX-QESD-2026-SM-447BI
20-29 years, male
1256.8
GTEX-X4EP-1026-SM-4QAS5
60-69 years, female
1240.4
GTEX-RU72-1426-SM-46MUF
50-59 years, female
1234.5
GTEX-P78B-1326-SM-3P611
40-49 years, female
1220.1
GTEX-14753-1626-SM-5NQ9L
60-69 years, male
1207.5
GTEX-12WSD-1426-SM-5GCN9
60-69 years, female
1196.1
GTEX-PX3G-0826-SM-48TZS
20-29 years, female
1166.2
GTEX-145LU-1326-SM-5LU9N
50-59 years, male
1165.7
GTEX-139TU-0826-SM-5IJFG
60-69 years, male
1150.6
GTEX-11ZTS-1426-SM-5EQMM
60-69 years, female
1124.8
GTEX-131XH-0626-SM-5LZWH
50-59 years, male
1120.1
GTEX-YFC4-1526-SM-5IFJS
40-49 years, female
1112.3
GTEX-12WSM-0726-SM-5GCOW
60-69 years, male
1110.5
GTEX-1399T-0826-SM-5IFES
60-69 years, male
1102.2
GTEX-ZAB5-0426-SM-5CVMI
50-59 years, male
1098.2
GTEX-14A5I-1726-SM-5QGQ5
50-59 years, female
1096.9
GTEX-11ZVC-0726-SM-5FQT9
50-59 years, female
1094.6
GTEX-XOTO-0826-SM-4B65O
50-59 years, male
1077.3
GTEX-UTHO-2426-SM-4JBHD
60-69 years, male
1070.6
GTEX-Y5V5-0926-SM-4VBPZ
60-69 years, female
1069.5
GTEX-OOBJ-0826-SM-3NB2K
60-69 years, male
1065.3
GTEX-UPK5-1426-SM-4JBHH
40-49 years, male
1047.0
GTEX-13NYB-1026-SM-5IFH3
40-49 years, male
1045.2
GTEX-13VXU-0926-SM-5IFFH
50-59 years, male
1043.5
GTEX-11GSP-0626-SM-5986T
60-69 years, female
1025.6
GTEX-12KS4-1326-SM-5LUB3
30-39 years, male
1021.9
GTEX-11WQC-0726-SM-5EQMR
60-69 years, male
970.1
GTEX-1497J-0726-SM-5Q5D1
60-69 years, male
967.9
GTEX-ZVT4-0626-SM-5E45T
50-59 years, female
966.4
GTEX-ZF2S-3026-SM-4WWCH
50-59 years, female
957.7
GTEX-X4EO-1126-SM-4QARQ
60-69 years, female
953.8
GTEX-13FTW-1126-SM-5J2NV
40-49 years, male
943.9
GTEX-13113-1326-SM-5GCOI
60-69 years, female
940.5
GTEX-13112-1426-SM-5EGH8
50-59 years, male
936.2
GTEX-11EQ9-0526-SM-5A5JZ
30-39 years, male
933.4
GTEX-147JS-1126-SM-5RQIW
60-69 years, male
931.1
GTEX-132NY-0926-SM-5P9G3
60-69 years, male
929.8
GTEX-QV44-0326-SM-4R1KD
50-59 years, male
926.2
GTEX-145MO-2326-SM-5NQ9K
60-69 years, male
905.3
GTEX-QEG4-1826-SM-4R1JN
30-39 years, male
899.6
GTEX-11ZUS-2526-SM-59872
30-39 years, male
896.9
GTEX-1399R-1226-SM-5P9GF
30-39 years, male
889.8
GTEX-WQUQ-1926-SM-4OOSA
60-69 years, male
889.2
GTEX-ZAB4-0826-SM-5LU9D
40-49 years, male
859.7
GTEX-13FTZ-0726-SM-5IFFY
60-69 years, male
857.0
GTEX-X261-1726-SM-4PQYT
50-59 years, male
851.3
GTEX-REY6-1226-SM-48FDR
60-69 years, male
842.6
GTEX-14E1K-0326-SM-5S2PE
50-59 years, male
839.1
GTEX-WFON-1726-SM-4LVMQ
40-49 years, male
836.9
GTEX-13NZB-0626-SM-5IFH6
30-39 years, male
829.8
GTEX-12WSI-0226-SM-5GCNA
50-59 years, male
827.6
GTEX-WZTO-0626-SM-4PQYY
40-49 years, male
809.9
GTEX-147F4-1426-SM-5LUA8
50-59 years, male
807.9
GTEX-ZVP2-0626-SM-51MSO
50-59 years, male
789.7
GTEX-S33H-1626-SM-4AD68
30-39 years, male
756.8
GTEX-WYVS-1926-SM-4PQZ2
40-49 years, female
754.3
GTEX-11DXZ-0126-SM-5EGGY
50-59 years, male
741.6
GTEX-ZYY3-0626-SM-5NQ6W
60-69 years, female
728.2
GTEX-S4Z8-0526-SM-4AD4T
60-69 years, male
723.5
GTEX-12696-0826-SM-5EGGE
60-69 years, male
716.8
GTEX-ZF29-2026-SM-4WWB7
60-69 years, female
714.3
GTEX-X3Y1-2726-SM-4PQZH
40-49 years, male
708.0
GTEX-ZZPU-0426-SM-5GZYH
50-59 years, female
694.8
GTEX-13N2G-0926-SM-5IFGJ
60-69 years, male
679.7
GTEX-1269C-0626-SM-5FQSS
60-69 years, female
663.5
GTEX-13N11-0926-SM-5IJG2
50-59 years, female
658.3
GTEX-Q734-0326-SM-48U15
40-49 years, female
643.0
GTEX-Z9EW-0426-SM-5CVM9
40-49 years, male
616.1
GTEX-13NZ9-1326-SM-5MR3V
50-59 years, male
611.4
GTEX-13O3O-1826-SM-5IFGW
60-69 years, female
608.6
GTEX-Y5LM-0426-SM-4VBRO
40-49 years, female
608.0
GTEX-RM2N-1926-SM-48FCU
50-59 years, male
605.8
GTEX-13PVR-0126-SM-5S2PY
60-69 years, female
603.8
GTEX-VUSG-0126-SM-4KL1X
50-59 years, male
594.0
GTEX-QEL4-1226-SM-447A4
50-59 years, male
563.7
GTEX-YEC4-0826-SM-5P9FV
40-49 years, male
496.7
GTEX-139YR-0226-SM-5IFEM
50-59 years, male
495.7
GTEX-ZPU1-0826-SM-57WG2
40-49 years, male
469.9
GTEX-TKQ2-1726-SM-4DXUP
50-59 years, male
454.3
GTEX-YB5E-0326-SM-5IFHU
40-49 years, male
454.2
GTEX-146FH-1526-SM-5NQBU
50-59 years, female
429.9
GTEX-U3ZN-0226-SM-3DB8D
30-39 years, female
418.0
GTEX-ZTPG-1426-SM-51MT3
20-29 years, female
408.3
GTEX-12WSL-0226-SM-5CVMJ
50-59 years, male
400.5
GTEX-12ZZZ-1326-SM-59HKW
60-69 years, male
367.9
GTEX-S32W-1926-SM-4AD63
50-59 years, female
367.6
GTEX-QDVN-0826-SM-48TZ2
50-59 years, male
362.9
GTEX-131XE-0326-SM-5LZVO
50-59 years, male
343.6
GTEX-12WSG-0626-SM-5FQTQ
50-59 years, female
334.0
GTEX-144GM-1326-SM-5LU5E
20-29 years, male
300.5
GTEX-X4XY-1626-SM-46MVN
60-69 years, male
272.4
GTEX-14C38-1526-SM-5RQJ7
50-59 years, male
180.6
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.