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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 7035.6
Min RPKM: 0.9
Std RPKM: 1568.2
Median RPKM: 1282.8
GTEX-139T6-1026-SM-5IJGC
50-59 years, male
7035.6
GTEX-ZA64-1226-SM-5HL7B
20-29 years, male
5792.9
GTEX-VJYA-0926-SM-4KL1N
60-69 years, male
5786.7
GTEX-13RTK-0826-SM-5Q5C6
20-29 years, male
5772.1
GTEX-ZQG8-2526-SM-57WEQ
60-69 years, female
5584.3
GTEX-13PL7-2626-SM-5IFH4
60-69 years, female
4760.3
GTEX-ZYFG-2026-SM-5E43Y
60-69 years, female
4556.8
GTEX-145LT-1026-SM-5LU9O
40-49 years, male
4466.6
GTEX-13FTW-2026-SM-5IJE2
40-49 years, male
3965.8
GTEX-YB5E-1526-SM-5IFIE
40-49 years, male
3924.2
GTEX-XUZC-1426-SM-4BRV3
30-39 years, female
3687.2
GTEX-XBED-1426-SM-4AT4G
60-69 years, male
3509.2
GTEX-XGQ4-1326-SM-4GIDU
50-59 years, male
3434.2
GTEX-ZP4G-1626-SM-57WGD
20-29 years, female
3305.1
GTEX-ZXES-1526-SM-5NQ95
30-39 years, female
3282.5
GTEX-ZTSS-0926-SM-59865
40-49 years, male
3267.8
GTEX-133LE-1426-SM-5IFH1
20-29 years, female
3150.0
GTEX-Y5LM-1626-SM-4VDTB
40-49 years, female
3008.6
GTEX-WFG8-1626-SM-4LVMB
20-29 years, male
2849.8
GTEX-13O21-1026-SM-5IJDU
50-59 years, male
2816.3
GTEX-YF7O-1826-SM-5IFIU
50-59 years, male
2719.3
GTEX-11EQ9-1326-SM-5985X
30-39 years, male
2688.1
GTEX-1122O-1326-SM-5H11F
60-69 years, female
2597.2
GTEX-11P7K-1626-SM-5GU63
30-39 years, male
2418.6
GTEX-13D11-0726-SM-5LZZB
50-59 years, female
2353.9
GTEX-13113-1226-SM-5EGHT
60-69 years, female
2335.5
GTEX-ZTX8-0526-SM-59HLD
20-29 years, male
2208.2
GTEX-ZLV1-1126-SM-4WWBW
60-69 years, female
2032.2
GTEX-148VJ-2226-SM-5NQ9M
70-79 years, male
1952.5
GTEX-11DXX-1626-SM-5H11H
60-69 years, female
1756.4
GTEX-X5EB-1626-SM-4E3IV
40-49 years, male
1743.2
GTEX-ZVT2-2126-SM-5NQ93
50-59 years, female
1697.4
GTEX-1399U-2126-SM-5IFEZ
50-59 years, female
1694.0
GTEX-11I78-1126-SM-5A5K5
50-59 years, female
1630.0
GTEX-13CF3-1226-SM-5LZXN
60-69 years, female
1593.1
GTEX-ZLFU-1526-SM-4WWBT
40-49 years, male
1587.1
GTEX-WFG7-1726-SM-4LVME
20-29 years, male
1544.4
GTEX-11P82-0826-SM-5P9GU
20-29 years, male
1473.2
GTEX-YEC4-1726-SM-4W21E
40-49 years, male
1418.0
GTEX-14DAR-1426-SM-5RQIR
50-59 years, male
1414.2
GTEX-14E6E-1626-SM-5RQI7
30-39 years, male
1408.7
GTEX-ZYWO-1526-SM-5SIAL
40-49 years, female
1354.5
GTEX-131XF-1326-SM-5GCMQ
60-69 years, male
1348.8
GTEX-145ME-0926-SM-5O9AR
40-49 years, female
1283.3
GTEX-WRHK-1026-SM-4MVOD
20-29 years, female
1282.4
GTEX-XAJ8-0526-SM-47JYK
40-49 years, male
1273.8
GTEX-Y3IK-1726-SM-4YCCR
50-59 years, female
1250.2
GTEX-WH7G-1626-SM-4LVMY
40-49 years, male
1179.6
GTEX-ZVZP-1826-SM-5GZXB
50-59 years, male
1178.3
GTEX-X15G-1426-SM-4PQZK
50-59 years, female
1158.2
GTEX-Z9EW-0926-SM-5CVMM
40-49 years, male
1083.0
GTEX-11VI4-1626-SM-5EQKO
40-49 years, female
1045.1
GTEX-ZPCL-1726-SM-57WEO
60-69 years, female
997.0
GTEX-11XUK-1426-SM-5EQMG
40-49 years, female
973.2
GTEX-Y114-1426-SM-4TT6W
50-59 years, female
934.1
GTEX-ZEX8-1826-SM-57WBH
50-59 years, male
910.2
GTEX-139YR-2226-SM-5IFFW
50-59 years, male
902.3
GTEX-ZPIC-2326-SM-57WDW
40-49 years, female
877.9
GTEX-11DXZ-1326-SM-5H11X
50-59 years, male
827.3
GTEX-11NSD-1726-SM-5N9C3
20-29 years, male
823.8
GTEX-13QBU-1926-SM-5IJEW
40-49 years, female
797.5
GTEX-ZZ64-0526-SM-5GZXM
20-29 years, male
786.2
GTEX-ZVP2-1726-SM-5GU5P
50-59 years, male
750.8
GTEX-XXEK-1026-SM-4BRUW
50-59 years, male
748.6
GTEX-131XG-1726-SM-5LZUR
50-59 years, female
729.1
GTEX-WQUQ-2426-SM-4MVNW
60-69 years, male
676.9
GTEX-13FH7-1226-SM-5IJFK
50-59 years, female
642.3
GTEX-13O61-1326-SM-5KM31
60-69 years, male
610.8
GTEX-ZTPG-2626-SM-57WFX
20-29 years, female
574.2
GTEX-12BJ1-1926-SM-5HL9Z
60-69 years, male
561.4
GTEX-1399R-2026-SM-5K7WN
30-39 years, male
554.2
GTEX-Y9LG-1626-SM-5IFHM
30-39 years, male
513.2
GTEX-111YS-1426-SM-5GID8
60-69 years, male
493.1
GTEX-12WSK-1526-SM-5CVNO
40-49 years, female
476.7
GTEX-1399S-2026-SM-5KM4B
30-39 years, female
346.3
GTEX-13111-1426-SM-5DUW3
50-59 years, male
290.0
GTEX-WEY5-1526-SM-4LMJF
40-49 years, female
270.4
GTEX-WFJO-0926-SM-4LVM2
30-39 years, male
235.8
GTEX-ZC5H-2326-SM-4WAYT
40-49 years, female
187.5
GTEX-VUSG-1726-SM-4KKZL
50-59 years, male
178.0
GTEX-XMK1-1826-SM-4B66F
40-49 years, male
58.5
GTEX-1192X-2526-SM-59868
50-59 years, male
45.8
GTEX-13OVI-1926-SM-5IJCG
60-69 years, female
40.2
GTEX-UPK5-2026-SM-4JBIM
40-49 years, male
10.6
GTEX-ZF2S-1726-SM-57WFT
50-59 years, female
4.9
GTEX-111CU-1326-SM-5NQ8L
50-59 years, male
3.4
GTEX-117YX-0326-SM-5GICL
50-59 years, male
1.2
GTEX-ZQUD-0926-SM-57WE3
30-39 years, male
0.9
Show all
SMALL INTESTINE - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.