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COLON - Expression summary
RNA expressioni
HPA:6.8TPM
GTEx:17.7RPKM
FANTOM5:16.3Tags Per Million

COLON - Annotated protein expression
Pending normal tissue analysis

COLON - HPA RNA-seqi
Average TPM 6.8
overview Male, age 54 Sample 1
TPM: 6.5
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 5.5
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 3.2
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 7.7
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 5.8
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 11.9
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 8.8
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 4.4
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 10
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 3.9
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 7.8
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 5.2
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 7.3
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seqi
Average RPKM 17.7
GTEx sample id Sample description RPKM
Colon - Sigmoid
RPKM: 25.8
Samples: 149

Max RPKM: 98.0
Min RPKM: 3.8
Std RPKM: 14.7
Median RPKM: 21.6
GTEX-147GR-2826-SM-5RQK8 60-69 years, male 98.0
GTEX-13PL7-2426-SM-5J2N3 60-69 years, female 69.4
GTEX-13PVQ-2726-SM-5L3H7 50-59 years, male 69.2
GTEX-ZYY3-2226-SM-5E45A 60-69 years, female 66.9
GTEX-145LS-2926-SM-5O99G 60-69 years, female 56.3
GTEX-12696-1926-SM-5EGJT 60-69 years, male 53.2
GTEX-13N2G-2226-SM-5IJCU 60-69 years, male 52.9
GTEX-13X6K-2726-SM-5O9DG 60-69 years, female 51.2
GTEX-148VJ-2426-SM-5NQ9Y 70-79 years, male 50.1
GTEX-132NY-2726-SM-5PNY2 60-69 years, male 47.8
Show all
Colon - Transverse
RPKM: 11.6
Samples: 196

Max RPKM: 53.8
Min RPKM: 1.0
Std RPKM: 11.1
Median RPKM: 7.2
GTEX-11TTK-2426-SM-5PNYO 60-69 years, female 53.8
GTEX-12ZZZ-2426-SM-5GCNN 60-69 years, male 51.2
GTEX-14BMV-2426-SM-5S2PP 50-59 years, male 50.9
GTEX-145MO-2426-SM-5NQ9W 60-69 years, male 48.0
GTEX-111VG-2226-SM-5N9DU 60-69 years, male 45.2
GTEX-YEC4-1926-SM-5IFHJ 40-49 years, male 42.9
GTEX-Y8LW-1226-SM-4WWDP 50-59 years, female 42.0
GTEX-11O72-2226-SM-5PNW2 40-49 years, male 39.8
GTEX-13FHP-2426-SM-5KLZ5 50-59 years, male 39.4
GTEX-148VJ-2626-SM-5QGPI 70-79 years, male 39.2
Show all

COLON - FANTOM5 CAGEi
Average Tags Per Million 16.3
FANTOM5 sample id Sample description Tags Per Million
Colon
Tags Per Million: 19.9
FF:10014-101C5 62,83,84 years, mixed 16.3

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The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.