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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.
- Antibody HPA011893
Glial cells
Not detected
Neuronal cells
Medium
Neuronal projections
High
Synapses
Not detected
Extended tissue profilei
For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.
- Antibody HPA075062
Glial cells
Not detected
Neuronal cells
Not detected
Neuronal projections
High
Synapses
Not detected
HYPOTHALAMUS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 859.5
Min RPKM: 7.4
Std RPKM: 182.0
Median RPKM: 192.1
GTEX-13NYB-0011-R8a-SM-5KM4R
40-49 years, male
859.5
GTEX-1445S-0011-R8a-SM-5PNWX
60-69 years, male
796.8
GTEX-QVUS-0011-R8A-SM-3GAD7
60-69 years, female
688.8
GTEX-145LU-0011-R8b-SM-5PNZG
50-59 years, male
678.2
GTEX-12ZZX-0011-R8a-SM-5DUW8
40-49 years, female
659.6
GTEX-R55F-0011-R8A-SM-2TF4F
50-59 years, male
609.1
GTEX-NPJ8-0011-R8a-SM-2HMLG
40-49 years, male
593.3
GTEX-13JVG-0011-R8a-SM-5KM3E
60-69 years, male
539.0
GTEX-13X6K-0011-R8b-SM-5PNZ4
60-69 years, female
524.3
GTEX-Z93S-0011-R8a-SM-4RGNL
50-59 years, male
498.7
GTEX-X585-0011-R8A-SM-46MUX
50-59 years, male
481.1
GTEX-NL4W-0011-R8a-SM-2I3G4
50-59 years, male
465.0
GTEX-13N1W-0011-R8a-SM-5MR56
70-79 years, male
437.4
GTEX-QMR6-0011-R8A-SM-32PKJ
50-59 years, male
425.4
GTEX-13RTJ-0011-R8b-SM-5O9DL
60-69 years, male
418.8
GTEX-1399T-0011-R8b-SM-5IJD8
60-69 years, male
397.4
GTEX-13OW6-0011-R8a-SM-5L3GF
50-59 years, male
378.1
GTEX-X261-0011-R8A-SM-4E3I5
50-59 years, male
374.9
GTEX-WZTO-0011-R8A-SM-4E3II
40-49 years, male
373.6
GTEX-WHSE-0011-R8A-SM-3P5Z1
20-29 years, male
360.5
GTEX-13O3Q-0011-R8b-SM-5KM2J
50-59 years, male
338.7
GTEX-13OVH-0011-R8b-SM-5MR35
70-79 years, male
328.3
GTEX-S7SE-0011-R8A-SM-2XCDG
50-59 years, male
326.4
GTEX-13G51-0011-R8b-SM-5LZZ4
60-69 years, male
325.0
GTEX-RU72-0011-R8A-SM-2TF61
50-59 years, female
320.4
GTEX-13OW7-0011-R8b-SM-5L3HR
50-59 years, male
317.8
GTEX-11ZUS-0011-R8a-SM-5BC73
30-39 years, male
313.4
GTEX-145LS-0011-R8b-SM-5PNXA
60-69 years, female
313.1
GTEX-ZXG5-0011-R8a-SM-57WD1
60-69 years, male
300.7
GTEX-11OF3-0011-R8b-SM-57WCS
60-69 years, male
298.6
GTEX-131XH-0011-R8a-SM-5EGLL
50-59 years, male
296.5
GTEX-13CIG-0011-R8b-SM-5LZX5
50-59 years, male
295.7
GTEX-14ASI-0011-R8b-SM-5S2UB
60-69 years, male
282.2
GTEX-1313W-0011-R8a-SM-5DUVM
50-59 years, female
280.8
GTEX-NPJ7-0011-R8a-SM-2I3G2
60-69 years, female
269.1
GTEX-T6MN-0011-R8A-SM-32QP3
50-59 years, male
260.4
GTEX-ZUA1-0011-R8b-SM-51MST
40-49 years, male
258.7
GTEX-13QIC-0011-R8b-SM-5O9CV
60-69 years, female
258.3
GTEX-X4XX-0011-R8B-SM-46MWM
60-69 years, male
256.0
GTEX-13IVO-0011-R8a-SM-5L3DY
70-79 years, male
249.7
GTEX-PWO3-0011-R8A-SM-2I5GD
60-69 years, female
236.5
GTEX-13CF2-0011-R8b-SM-5IJCX
60-69 years, male
228.5
GTEX-13FXS-0011-R8a-SM-5J1MN
50-59 years, male
228.0
GTEX-ZVZQ-0011-R8a-SM-51MR5
60-69 years, female
220.8
GTEX-11WQC-0011-R8b-SM-57WCH
60-69 years, male
216.3
GTEX-TSE9-0011-R8A-SM-3DB7R
60-69 years, female
203.9
GTEX-13FLW-0011-R8b-SM-5J1MZ
50-59 years, male
198.4
GTEX-11ZTS-0011-R8a-SM-57WDI
60-69 years, female
192.7
GTEX-13NZA-0011-R8b-SM-5KM2Q
60-69 years, male
191.6
GTEX-ZDXO-0011-R8a-SM-4WWD7
60-69 years, male
185.1
GTEX-13PDP-0011-R8b-SM-5O9CS
60-69 years, male
185.0
GTEX-13O3O-0011-R8b-SM-5LUAL
60-69 years, female
174.1
GTEX-13SLW-0011-R8b-SM-5SI64
70-79 years, male
173.3
GTEX-N7MT-0011-R8a-SM-2I5GU
60-69 years, female
170.9
GTEX-13FLV-0011-R8a-SM-5LZZE
50-59 years, male
161.6
GTEX-T5JC-0011-R8A-SM-32PLM
20-29 years, male
159.8
GTEX-12WSM-0011-R8a-SM-5DUWJ
60-69 years, male
153.9
GTEX-13SLX-0011-R8b-SM-5PNWZ
50-59 years, female
152.3
GTEX-11ONC-0011-R8b-SM-5NQ87
60-69 years, male
146.4
GTEX-YFC4-0011-R8a-SM-4SOK3
40-49 years, female
143.1
GTEX-R55E-0011-R8A-SM-2TC66
20-29 years, male
134.4
GTEX-P44H-0011-R8A-SM-2XCEL
40-49 years, male
133.0
GTEX-145MH-0011-R8a-SM-5PNUL
50-59 years, male
131.2
GTEX-QVJO-0011-R8A-SM-447C7
60-69 years, female
130.5
GTEX-132Q8-0011-R8b-SM-5DUWX
60-69 years, male
129.5
GTEX-XOTO-0011-R8A-SM-4B65J
50-59 years, male
126.4
GTEX-ZAB4-0011-R8b-SM-4SOKF
40-49 years, male
124.5
GTEX-13OW8-0011-R8a-SM-5L3G5
60-69 years, male
118.0
GTEX-XMD1-0011-R8A-SM-4AT48
60-69 years, male
106.1
GTEX-144GL-0011-R8a-SM-5Q5B1
50-59 years, male
102.0
GTEX-ZVT3-0011-R8b-SM-57WDJ
60-69 years, female
101.3
GTEX-13NYS-0011-R8a-SM-5MR5H
60-69 years, male
98.2
GTEX-13OW5-0011-R8a-SM-5L3GQ
60-69 years, male
96.7
GTEX-13X6I-0011-R8a-SM-5PNZF
60-69 years, male
96.7
GTEX-131XW-0011-R8a-SM-5DUWY
50-59 years, female
90.2
GTEX-13OVL-0011-R8a-SM-5L3HH
50-59 years, male
90.0
GTEX-139TS-0011-R8a-SM-5J1NP
60-69 years, male
86.7
GTEX-11WQK-0011-R8a-SM-5BC7C
50-59 years, male
84.7
GTEX-11GSP-0011-R8b-SM-5NQ79
60-69 years, female
84.2
GTEX-13NZ8-0011-R8b-SM-5KM48
60-69 years, female
83.6
GTEX-Q2AG-0011-R8A-SM-2HMK5
40-49 years, female
83.0
GTEX-13OVJ-0011-R8b-SM-5L3FS
50-59 years, female
78.6
GTEX-13X6J-0011-R8b-SM-5PNUA
50-59 years, male
78.5
GTEX-147F4-0011-R8b-SM-5S2UN
50-59 years, male
78.0
GTEX-YJ89-0011-R8b-SM-4SOK8
60-69 years, male
73.6
GTEX-11H98-0011-R8a-SM-5NQ8V
50-59 years, male
67.2
GTEX-12WSA-0011-R8a-SM-5P9EX
60-69 years, male
53.0
GTEX-WWYW-0011-R8A-SM-3NB3S
50-59 years, female
51.9
GTEX-ZF28-0011-R8a-SM-4WWFW
60-69 years, male
46.2
GTEX-13QJC-0011-R8b-SM-5S2U6
60-69 years, female
33.9
GTEX-14753-0011-R8b-SM-5S2U1
60-69 years, male
30.9
GTEX-X4XY-0011-R8A-SM-46MVC
60-69 years, male
28.7
GTEX-N7MS-0011-R8a-SM-2YUMK
60-69 years, male
18.5
GTEX-WVLH-0011-R8A-SM-3MJFC
50-59 years, male
16.4
GTEX-NL3H-0011-R8a-SM-5S2VF
60-69 years, male
11.0
GTEX-RVPU-0011-R8A-SM-5SI8I
50-59 years, male
7.4
Show all
HYPOTHALAMUS - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.