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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 438.9
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 378.8
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 518.5
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 626
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 579
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 574.2
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 492
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 573.3
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 282.2
Min RPKM: 58.6
Std RPKM: 42.4
Median RPKM: 135.5
GTEX-ZTPG-1426-SM-51MT3
20-29 years, female
282.2
GTEX-S32W-1926-SM-4AD63
50-59 years, female
274.4
GTEX-UTHO-2426-SM-4JBHD
60-69 years, male
267.6
GTEX-12696-0826-SM-5EGGE
60-69 years, male
262.2
GTEX-13N11-0926-SM-5IJG2
50-59 years, female
253.8
GTEX-REY6-1226-SM-48FDR
60-69 years, male
241.4
GTEX-YB5E-0326-SM-5IFHU
40-49 years, male
241.1
GTEX-14C38-1526-SM-5RQJ7
50-59 years, male
211.3
GTEX-13NYB-1026-SM-5IFH3
40-49 years, male
208.0
GTEX-QDVN-0826-SM-48TZ2
50-59 years, male
207.2
GTEX-13NZ9-1326-SM-5MR3V
50-59 years, male
194.5
GTEX-131XE-0326-SM-5LZVO
50-59 years, male
194.2
GTEX-131XH-0626-SM-5LZWH
50-59 years, male
190.9
GTEX-RTLS-1326-SM-46MUN
60-69 years, female
190.6
GTEX-145MF-0826-SM-5QGQA
50-59 years, male
187.7
GTEX-RN64-1826-SM-48FDV
50-59 years, male
185.6
GTEX-132NY-0926-SM-5P9G3
60-69 years, male
184.9
GTEX-QEG4-1826-SM-4R1JN
30-39 years, male
184.2
GTEX-UPIC-0926-SM-4IHLV
20-29 years, female
182.7
GTEX-12KS4-1326-SM-5LUB3
30-39 years, male
181.9
GTEX-YFC4-1526-SM-5IFJS
40-49 years, female
181.3
GTEX-QEL4-1226-SM-447A4
50-59 years, male
179.9
GTEX-RU72-1426-SM-46MUF
50-59 years, female
177.0
GTEX-Y5LM-0426-SM-4VBRO
40-49 years, female
177.0
GTEX-11WQC-0726-SM-5EQMR
60-69 years, male
176.7
GTEX-QESD-2026-SM-447BI
20-29 years, male
173.7
GTEX-ZYY3-0626-SM-5NQ6W
60-69 years, female
172.4
GTEX-X261-1726-SM-4PQYT
50-59 years, male
170.8
GTEX-12WSI-0226-SM-5GCNA
50-59 years, male
167.6
GTEX-13N2G-0926-SM-5IFGJ
60-69 years, male
167.0
GTEX-147F4-1426-SM-5LUA8
50-59 years, male
162.7
GTEX-ZYT6-0626-SM-5E45V
30-39 years, male
162.3
GTEX-YECK-1926-SM-4W21H
60-69 years, male
161.6
GTEX-X4XY-1626-SM-46MVN
60-69 years, male
158.4
GTEX-1497J-0726-SM-5Q5D1
60-69 years, male
158.2
GTEX-S33H-1626-SM-4AD68
30-39 years, male
157.2
GTEX-RNOR-1426-SM-48FDJ
50-59 years, female
156.7
GTEX-14A5I-1726-SM-5QGQ5
50-59 years, female
156.5
GTEX-12WSM-0726-SM-5GCOW
60-69 years, male
155.6
GTEX-1269C-0626-SM-5FQSS
60-69 years, female
154.8
GTEX-11OF3-0726-SM-5BC4Z
60-69 years, male
154.1
GTEX-12WSG-0626-SM-5FQTQ
50-59 years, female
154.1
GTEX-14DAQ-1726-SM-5S2R2
60-69 years, female
152.6
GTEX-ZVP2-0626-SM-51MSO
50-59 years, male
152.3
GTEX-ZAB4-0826-SM-5LU9D
40-49 years, male
150.5
GTEX-131YS-1626-SM-5HL6C
60-69 years, female
149.4
GTEX-11ZUS-2526-SM-59872
30-39 years, male
148.1
GTEX-12WSL-0226-SM-5CVMJ
50-59 years, male
146.4
GTEX-13FLV-0326-SM-5N9DJ
50-59 years, male
146.4
GTEX-WZTO-0626-SM-4PQYY
40-49 years, male
145.5
GTEX-ZVT3-1626-SM-5GU66
60-69 years, female
145.0
GTEX-X4EO-1126-SM-4QARQ
60-69 years, female
143.9
GTEX-11DXY-0526-SM-5EGGQ
60-69 years, male
143.7
GTEX-139YR-0226-SM-5IFEM
50-59 years, male
143.2
GTEX-13PVR-0126-SM-5S2PY
60-69 years, female
143.0
GTEX-11NV4-1326-SM-5HL6V
60-69 years, male
142.6
GTEX-13OW6-2626-SM-5IFF2
50-59 years, male
139.2
GTEX-146FH-1526-SM-5NQBU
50-59 years, female
139.1
GTEX-1399T-0826-SM-5IFES
60-69 years, male
137.6
GTEX-13O3O-1826-SM-5IFGW
60-69 years, female
135.5
GTEX-SJXC-1226-SM-4DM78
60-69 years, male
135.3
GTEX-RWSA-1426-SM-47JXA
40-49 years, male
134.5
GTEX-144GM-1326-SM-5LU5E
20-29 years, male
133.7
GTEX-13VXU-0926-SM-5IFFH
50-59 years, male
133.3
GTEX-WYVS-1926-SM-4PQZ2
40-49 years, female
131.8
GTEX-139TS-1426-SM-5IFJD
60-69 years, male
131.4
GTEX-12WSD-1426-SM-5GCN9
60-69 years, female
131.3
GTEX-14AS3-0126-SM-5Q5F4
40-49 years, female
131.3
GTEX-13112-1426-SM-5EGH8
50-59 years, male
130.0
GTEX-TKQ2-1726-SM-4DXUP
50-59 years, male
129.9
GTEX-ZVT4-0626-SM-5E45T
50-59 years, female
129.1
GTEX-S4Z8-0526-SM-4AD4T
60-69 years, male
129.0
GTEX-11ZVC-0726-SM-5FQT9
50-59 years, female
128.6
GTEX-1212Z-0226-SM-59HLF
60-69 years, male
127.6
GTEX-X3Y1-2726-SM-4PQZH
40-49 years, male
126.9
GTEX-YEC4-0826-SM-5P9FV
40-49 years, male
126.7
GTEX-13FTW-1126-SM-5J2NV
40-49 years, male
126.4
GTEX-ZF29-2026-SM-4WWB7
60-69 years, female
126.3
GTEX-11EQ9-0526-SM-5A5JZ
30-39 years, male
123.4
GTEX-145MO-2326-SM-5NQ9K
60-69 years, male
122.6
GTEX-13FTZ-0726-SM-5IFFY
60-69 years, male
122.4
GTEX-T6MN-1226-SM-3NMA5
50-59 years, male
121.7
GTEX-WFON-1726-SM-4LVMQ
40-49 years, male
120.4
GTEX-X4EP-1026-SM-4QAS5
60-69 years, female
120.1
GTEX-13113-1326-SM-5GCOI
60-69 years, female
119.2
GTEX-P78B-1326-SM-3P611
40-49 years, female
118.6
GTEX-RM2N-1926-SM-48FCU
50-59 years, male
118.4
GTEX-11NUK-1226-SM-5P9GM
50-59 years, male
118.3
GTEX-147JS-1126-SM-5RQIW
60-69 years, male
117.4
GTEX-13SLX-1226-SM-5S2Q6
50-59 years, female
117.0
GTEX-XBEC-1526-SM-4AT68
50-59 years, male
116.5
GTEX-XOTO-0826-SM-4B65O
50-59 years, male
116.2
GTEX-R53T-0326-SM-48FEC
50-59 years, female
116.0
GTEX-Q2AG-1126-SM-48U1P
40-49 years, female
114.6
GTEX-VUSG-0126-SM-4KL1X
50-59 years, male
113.0
GTEX-Q734-0326-SM-48U15
40-49 years, female
111.4
GTEX-Y5V5-0926-SM-4VBPZ
60-69 years, female
111.2
GTEX-13QJC-0726-SM-5RQJK
60-69 years, female
110.8
GTEX-139TU-0826-SM-5IJFG
60-69 years, male
109.9
GTEX-145LU-1326-SM-5LU9N
50-59 years, male
109.0
GTEX-ZPU1-0826-SM-57WG2
40-49 years, male
109.0
GTEX-WQUQ-1926-SM-4OOSA
60-69 years, male
106.9
GTEX-11ZTS-1426-SM-5EQMM
60-69 years, female
105.8
GTEX-14E1K-0326-SM-5S2PE
50-59 years, male
103.4
GTEX-13NZB-0626-SM-5IFH6
30-39 years, male
101.5
GTEX-ZAB5-0426-SM-5CVMI
50-59 years, male
98.9
GTEX-PX3G-0826-SM-48TZS
20-29 years, female
98.4
GTEX-ZZPU-0426-SM-5GZYH
50-59 years, female
94.9
GTEX-U3ZN-0226-SM-3DB8D
30-39 years, female
94.8
GTEX-ZF2S-3026-SM-4WWCH
50-59 years, female
94.4
GTEX-11DXZ-0126-SM-5EGGY
50-59 years, male
92.3
GTEX-14753-1626-SM-5NQ9L
60-69 years, male
90.8
GTEX-Z9EW-0426-SM-5CVM9
40-49 years, male
88.8
GTEX-OOBJ-0826-SM-3NB2K
60-69 years, male
87.8
GTEX-UPK5-1426-SM-4JBHH
40-49 years, male
87.4
GTEX-1399R-1226-SM-5P9GF
30-39 years, male
82.5
GTEX-11GSP-0626-SM-5986T
60-69 years, female
80.3
GTEX-QV44-0326-SM-4R1KD
50-59 years, male
73.8
GTEX-12ZZZ-1326-SM-59HKW
60-69 years, male
58.6
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.