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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 593.8
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 940
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 508.3
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 855.5
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 736.6
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 681.5
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 711.4
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 1204.1
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 348.8
Min RPKM: 25.3
Std RPKM: 64.9
Median RPKM: 150.4
GTEX-14AS3-0126-SM-5Q5F4
40-49 years, female
348.8
GTEX-R53T-0326-SM-48FEC
50-59 years, female
336.7
GTEX-11OF3-0726-SM-5BC4Z
60-69 years, male
303.8
GTEX-OOBJ-0826-SM-3NB2K
60-69 years, male
294.8
GTEX-QV44-0326-SM-4R1KD
50-59 years, male
283.0
GTEX-131YS-1626-SM-5HL6C
60-69 years, female
275.6
GTEX-13SLX-1226-SM-5S2Q6
50-59 years, female
271.0
GTEX-13OW6-2626-SM-5IFF2
50-59 years, male
262.2
GTEX-ZAB5-0426-SM-5CVMI
50-59 years, male
243.6
GTEX-YECK-1926-SM-4W21H
60-69 years, male
243.1
GTEX-13NYB-1026-SM-5IFH3
40-49 years, male
239.7
GTEX-QESD-2026-SM-447BI
20-29 years, male
239.7
GTEX-ZYT6-0626-SM-5E45V
30-39 years, male
238.8
GTEX-13VXU-0926-SM-5IFFH
50-59 years, male
233.7
GTEX-13FTZ-0726-SM-5IFFY
60-69 years, male
233.6
GTEX-ZVT3-1626-SM-5GU66
60-69 years, female
232.9
GTEX-Q2AG-1126-SM-48U1P
40-49 years, female
227.0
GTEX-T6MN-1226-SM-3NMA5
50-59 years, male
224.9
GTEX-RNOR-1426-SM-48FDJ
50-59 years, female
223.5
GTEX-UPIC-0926-SM-4IHLV
20-29 years, female
222.0
GTEX-14DAQ-1726-SM-5S2R2
60-69 years, female
218.1
GTEX-145MF-0826-SM-5QGQA
50-59 years, male
217.2
GTEX-SJXC-1226-SM-4DM78
60-69 years, male
215.8
GTEX-U3ZN-0226-SM-3DB8D
30-39 years, female
212.1
GTEX-RN64-1826-SM-48FDV
50-59 years, male
210.2
GTEX-14E1K-0326-SM-5S2PE
50-59 years, male
209.7
GTEX-1399R-1226-SM-5P9GF
30-39 years, male
209.3
GTEX-14A5I-1726-SM-5QGQ5
50-59 years, female
202.9
GTEX-Y5V5-0926-SM-4VBPZ
60-69 years, female
202.7
GTEX-11NV4-1326-SM-5HL6V
60-69 years, male
202.0
GTEX-145LU-1326-SM-5LU9N
50-59 years, male
201.3
GTEX-12WSM-0726-SM-5GCOW
60-69 years, male
201.0
GTEX-1399T-0826-SM-5IFES
60-69 years, male
200.9
GTEX-11ZVC-0726-SM-5FQT9
50-59 years, female
195.4
GTEX-X4EO-1126-SM-4QARQ
60-69 years, female
193.4
GTEX-Q734-0326-SM-48U15
40-49 years, female
190.6
GTEX-ZVT4-0626-SM-5E45T
50-59 years, female
187.3
GTEX-12WSD-1426-SM-5GCN9
60-69 years, female
185.9
GTEX-S4Z8-0526-SM-4AD4T
60-69 years, male
185.7
GTEX-11DXZ-0126-SM-5EGGY
50-59 years, male
185.4
GTEX-11WQC-0726-SM-5EQMR
60-69 years, male
184.8
GTEX-QEG4-1826-SM-4R1JN
30-39 years, male
184.6
GTEX-11ZTS-1426-SM-5EQMM
60-69 years, female
182.2
GTEX-13QJC-0726-SM-5RQJK
60-69 years, female
181.4
GTEX-ZF2S-3026-SM-4WWCH
50-59 years, female
180.5
GTEX-13112-1426-SM-5EGH8
50-59 years, male
180.3
GTEX-11DXY-0526-SM-5EGGQ
60-69 years, male
176.5
GTEX-WFON-1726-SM-4LVMQ
40-49 years, male
173.4
GTEX-131XH-0626-SM-5LZWH
50-59 years, male
172.4
GTEX-RWSA-1426-SM-47JXA
40-49 years, male
171.5
GTEX-WZTO-0626-SM-4PQYY
40-49 years, male
170.5
GTEX-139TS-1426-SM-5IFJD
60-69 years, male
170.1
GTEX-RU72-1426-SM-46MUF
50-59 years, female
164.7
GTEX-P78B-1326-SM-3P611
40-49 years, female
161.7
GTEX-11NUK-1226-SM-5P9GM
50-59 years, male
159.9
GTEX-UTHO-2426-SM-4JBHD
60-69 years, male
159.0
GTEX-1269C-0626-SM-5FQSS
60-69 years, female
155.7
GTEX-Z9EW-0426-SM-5CVM9
40-49 years, male
153.4
GTEX-WYVS-1926-SM-4PQZ2
40-49 years, female
151.2
GTEX-WQUQ-1926-SM-4OOSA
60-69 years, male
150.4
GTEX-147JS-1126-SM-5RQIW
60-69 years, male
149.4
GTEX-139TU-0826-SM-5IJFG
60-69 years, male
148.5
GTEX-14753-1626-SM-5NQ9L
60-69 years, male
148.2
GTEX-X261-1726-SM-4PQYT
50-59 years, male
147.6
GTEX-RTLS-1326-SM-46MUN
60-69 years, female
145.6
GTEX-13FTW-1126-SM-5J2NV
40-49 years, male
143.8
GTEX-XBEC-1526-SM-4AT68
50-59 years, male
143.6
GTEX-RM2N-1926-SM-48FCU
50-59 years, male
142.8
GTEX-ZF29-2026-SM-4WWB7
60-69 years, female
139.9
GTEX-147F4-1426-SM-5LUA8
50-59 years, male
138.1
GTEX-ZVP2-0626-SM-51MSO
50-59 years, male
138.0
GTEX-XOTO-0826-SM-4B65O
50-59 years, male
137.6
GTEX-Y5LM-0426-SM-4VBRO
40-49 years, female
137.5
GTEX-ZPU1-0826-SM-57WG2
40-49 years, male
136.2
GTEX-11EQ9-0526-SM-5A5JZ
30-39 years, male
134.0
GTEX-PX3G-0826-SM-48TZS
20-29 years, female
134.0
GTEX-13FLV-0326-SM-5N9DJ
50-59 years, male
129.7
GTEX-1212Z-0226-SM-59HLF
60-69 years, male
128.9
GTEX-UPK5-1426-SM-4JBHH
40-49 years, male
128.6
GTEX-YFC4-1526-SM-5IFJS
40-49 years, female
127.7
GTEX-11GSP-0626-SM-5986T
60-69 years, female
125.1
GTEX-12WSI-0226-SM-5GCNA
50-59 years, male
123.2
GTEX-12KS4-1326-SM-5LUB3
30-39 years, male
123.0
GTEX-13N2G-0926-SM-5IFGJ
60-69 years, male
122.4
GTEX-ZZPU-0426-SM-5GZYH
50-59 years, female
122.2
GTEX-YB5E-0326-SM-5IFHU
40-49 years, male
119.5
GTEX-13NZB-0626-SM-5IFH6
30-39 years, male
117.7
GTEX-11ZUS-2526-SM-59872
30-39 years, male
113.8
GTEX-13NZ9-1326-SM-5MR3V
50-59 years, male
112.0
GTEX-REY6-1226-SM-48FDR
60-69 years, male
111.8
GTEX-13N11-0926-SM-5IJG2
50-59 years, female
109.1
GTEX-139YR-0226-SM-5IFEM
50-59 years, male
108.7
GTEX-1497J-0726-SM-5Q5D1
60-69 years, male
107.0
GTEX-X3Y1-2726-SM-4PQZH
40-49 years, male
105.8
GTEX-ZAB4-0826-SM-5LU9D
40-49 years, male
105.6
GTEX-13PVR-0126-SM-5S2PY
60-69 years, female
102.3
GTEX-QEL4-1226-SM-447A4
50-59 years, male
100.0
GTEX-VUSG-0126-SM-4KL1X
50-59 years, male
99.6
GTEX-12ZZZ-1326-SM-59HKW
60-69 years, male
99.1
GTEX-S33H-1626-SM-4AD68
30-39 years, male
98.0
GTEX-13113-1326-SM-5GCOI
60-69 years, female
97.0
GTEX-13O3O-1826-SM-5IFGW
60-69 years, female
94.1
GTEX-132NY-0926-SM-5P9G3
60-69 years, male
90.9
GTEX-12WSL-0226-SM-5CVMJ
50-59 years, male
81.8
GTEX-146FH-1526-SM-5NQBU
50-59 years, female
81.0
GTEX-145MO-2326-SM-5NQ9K
60-69 years, male
78.2
GTEX-TKQ2-1726-SM-4DXUP
50-59 years, male
76.7
GTEX-S32W-1926-SM-4AD63
50-59 years, female
76.5
GTEX-12696-0826-SM-5EGGE
60-69 years, male
70.9
GTEX-ZYY3-0626-SM-5NQ6W
60-69 years, female
68.2
GTEX-YEC4-0826-SM-5P9FV
40-49 years, male
64.6
GTEX-12WSG-0626-SM-5FQTQ
50-59 years, female
63.6
GTEX-X4EP-1026-SM-4QAS5
60-69 years, female
63.1
GTEX-X4XY-1626-SM-46MVN
60-69 years, male
49.3
GTEX-131XE-0326-SM-5LZVO
50-59 years, male
41.3
GTEX-QDVN-0826-SM-48TZ2
50-59 years, male
38.8
GTEX-ZTPG-1426-SM-51MT3
20-29 years, female
37.6
GTEX-144GM-1326-SM-5LU5E
20-29 years, male
30.7
GTEX-14C38-1526-SM-5RQJ7
50-59 years, male
25.3
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.