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RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 31.6
Min RPKM: 4.7
Std RPKM: 5.0
Median RPKM: 10.7
GTEX-Q734-0226-SM-48U1A
40-49 years, female
31.6
GTEX-ZPU1-1026-SM-4YCEQ
40-49 years, male
26.3
GTEX-XXEK-0126-SM-4BRVU
50-59 years, male
24.2
GTEX-U3ZN-0126-SM-4DXUM
30-39 years, female
22.2
GTEX-PW2O-0126-SM-48TC8
20-29 years, male
22.1
GTEX-UPK5-1626-SM-4JBHI
40-49 years, male
21.1
GTEX-QMRM-0226-SM-4R1K7
50-59 years, male
19.9
GTEX-X585-1826-SM-4QAS3
50-59 years, male
19.2
GTEX-PLZ6-0126-SM-48TC6
30-39 years, male
18.7
GTEX-QLQW-0126-SM-447BK
30-39 years, male
18.5
GTEX-139YR-0426-SM-5IFFV
50-59 years, male
18.1
GTEX-U3ZH-0126-SM-4DXUK
30-39 years, male
18.0
GTEX-XQ8I-1726-SM-4BOQB
50-59 years, male
17.7
GTEX-UJHI-0126-SM-4IHLP
50-59 years, female
17.5
GTEX-PX3G-0926-SM-48U12
20-29 years, female
17.4
GTEX-WHWD-0126-SM-4OORS
50-59 years, male
17.3
GTEX-146FQ-0626-SM-5LU9U
30-39 years, male
16.8
GTEX-POMQ-0126-SM-48TD6
20-29 years, female
16.6
GTEX-OIZH-0926-SM-48TBR
50-59 years, male
16.5
GTEX-VJYA-0126-SM-4KL1P
60-69 years, male
16.3
GTEX-13S86-0126-SM-5S2PI
40-49 years, male
16.0
GTEX-12WSJ-0526-SM-5GCOZ
40-49 years, female
15.8
GTEX-XV7Q-0126-SM-4BRVK
40-49 years, female
15.4
GTEX-11NSD-0426-SM-5N9CR
20-29 years, male
15.1
GTEX-12WSG-0926-SM-5EGIH
50-59 years, female
15.1
GTEX-P4QS-0926-SM-48TBS
60-69 years, male
15.0
GTEX-Y3IK-0126-SM-4WWE9
50-59 years, female
14.0
GTEX-ZAB5-0526-SM-5CVMU
50-59 years, male
13.8
GTEX-13N11-0126-SM-5KM2Z
50-59 years, female
13.7
GTEX-RUSQ-0126-SM-47JWV
50-59 years, male
13.6
GTEX-QV44-0126-SM-4R1KH
50-59 years, male
13.5
GTEX-ZYWO-0226-SM-5GZX3
40-49 years, female
13.5
GTEX-11P81-1326-SM-5GU5S
30-39 years, female
13.4
GTEX-U4B1-0526-SM-4DXTK
40-49 years, male
13.4
GTEX-XMK1-0126-SM-4B65F
40-49 years, male
13.3
GTEX-131XE-1126-SM-5EGHW
50-59 years, male
13.1
GTEX-XPVG-0626-SM-4B65B
50-59 years, male
12.9
GTEX-13U4I-1626-SM-5IFFR
40-49 years, female
12.7
GTEX-XGQ4-0126-SM-4AT4H
50-59 years, male
12.5
GTEX-YB5K-1926-SM-4VDT4
40-49 years, female
12.5
GTEX-1399R-0226-SM-5IJGG
30-39 years, male
12.3
GTEX-ZDTT-1026-SM-5KM19
60-69 years, male
12.3
GTEX-11DXX-0726-SM-5H12X
60-69 years, female
12.2
GTEX-OOBJ-0926-SM-48TDO
60-69 years, male
11.9
GTEX-14DAR-0326-SM-5S2PS
50-59 years, male
11.8
GTEX-ZVZP-0726-SM-59HKA
50-59 years, male
11.6
GTEX-13111-0126-SM-5EGHO
50-59 years, male
11.3
GTEX-145MN-0126-SM-5RQHY
30-39 years, male
11.3
GTEX-Y8LW-0126-SM-4VBS1
50-59 years, female
11.1
GTEX-13VXT-1326-SM-5LU3Y
20-29 years, female
11.0
GTEX-Y3I4-0126-SM-4TT26
50-59 years, male
10.8
GTEX-144GN-2126-SM-5O99D
50-59 years, male
10.7
GTEX-YFCO-0926-SM-5LUA5
40-49 years, male
10.7
GTEX-ZVP2-0526-SM-51MSC
50-59 years, male
10.6
GTEX-12WSN-0126-SM-5DUX5
40-49 years, male
10.1
GTEX-QV31-0126-SM-447BP
30-39 years, male
10.1
GTEX-139T6-0226-SM-5IFGZ
50-59 years, male
10.0
GTEX-1122O-0526-SM-5N9DM
60-69 years, female
9.9
GTEX-132QS-0226-SM-5IFFZ
60-69 years, male
9.9
GTEX-W5WG-0626-SM-4SOID
50-59 years, female
9.9
GTEX-YB5E-0426-SM-5IFHR
40-49 years, male
9.9
GTEX-117YX-2126-SM-5GIEL
50-59 years, male
9.7
GTEX-11EQ9-0426-SM-5A5JY
30-39 years, male
9.6
GTEX-11P7K-0426-SM-5BC5H
30-39 years, male
9.6
GTEX-O5YT-0926-SM-48TDG
20-29 years, male
9.2
GTEX-P4PP-0926-SM-48TBZ
30-39 years, female
9.2
GTEX-ZLFU-0526-SM-4WWBN
40-49 years, male
9.2
GTEX-Y5LM-0326-SM-4VBRN
40-49 years, female
9.0
GTEX-XAJ8-0126-SM-47JYG
40-49 years, male
8.8
GTEX-13CF3-0226-SM-5J1NW
60-69 years, female
8.7
GTEX-Q2AH-0226-SM-48U1I
40-49 years, male
8.4
GTEX-13PL7-1126-SM-5MR5O
60-69 years, female
8.2
GTEX-13PVR-0326-SM-5RQJY
60-69 years, female
8.2
GTEX-147F3-0126-SM-5NQBJ
50-59 years, female
7.9
GTEX-S4Z8-0226-SM-4AD5K
60-69 years, male
7.9
GTEX-ZZPU-0126-SM-5E446
50-59 years, female
7.8
GTEX-1399S-0226-SM-5IFFG
30-39 years, female
7.7
GTEX-ZYFG-0726-SM-5GIDX
60-69 years, female
7.7
GTEX-13X6H-0726-SM-5Q5BX
50-59 years, female
7.6
GTEX-YEC4-0126-SM-4W21T
40-49 years, male
7.4
GTEX-11LCK-0126-SM-5A5M5
30-39 years, male
7.3
GTEX-131XG-0426-SM-5IFGD
50-59 years, female
7.3
GTEX-R55G-0226-SM-48FEI
40-49 years, female
7.3
GTEX-ZV6S-0826-SM-5NQ6Z
40-49 years, female
7.3
GTEX-X4LF-0226-SM-4QAS8
50-59 years, male
7.2
GTEX-13FH7-1326-SM-5IFG8
50-59 years, female
7.1
GTEX-QCQG-0226-SM-48U28
50-59 years, female
7.0
GTEX-12BJ1-0726-SM-5EGGF
60-69 years, male
6.9
GTEX-T5JW-0126-SM-4DM6K
20-29 years, female
6.9
GTEX-Z9EW-0726-SM-5HL9H
40-49 years, male
6.9
GTEX-11XUK-0426-SM-5EQML
40-49 years, female
6.7
GTEX-12WSK-0126-SM-5GCO7
40-49 years, female
6.7
GTEX-14E6E-1226-SM-5S2R5
30-39 years, male
6.6
GTEX-WFON-0126-SM-4LVM9
40-49 years, male
6.4
GTEX-1211K-0426-SM-5FQTP
60-69 years, female
6.3
GTEX-XUJ4-0226-SM-4BOP8
60-69 years, female
6.3
GTEX-S3XE-0626-SM-4AD6B
50-59 years, male
5.7
GTEX-11VI4-0126-SM-5GU6Z
40-49 years, female
5.5
GTEX-QDVN-0526-SM-48TZ4
50-59 years, male
5.4
GTEX-X3Y1-0126-SM-4PQZA
40-49 years, male
5.4
GTEX-Y114-0726-SM-4TT6U
50-59 years, female
5.4
GTEX-ZP4G-0326-SM-4YCEF
20-29 years, female
5.4
GTEX-ZLWG-0426-SM-4WWFA
50-59 years, female
4.9
GTEX-146FR-1926-SM-5NQA6
60-69 years, female
4.7
Show all
SPLEEN - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.