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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 9221.9
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 9495.8
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 7993.2
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 10511.7
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 14593.9
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 9129.1
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 10500.5
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 8913.6
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 15379.3
Min RPKM: 288.0
Std RPKM: 3827.3
Median RPKM: 4330.3
GTEX-144GM-1326-SM-5LU5E
20-29 years, male
15379.3
GTEX-ZPU1-0826-SM-57WG2
40-49 years, male
15066.0
GTEX-Z9EW-0426-SM-5CVM9
40-49 years, male
14283.1
GTEX-TKQ2-1726-SM-4DXUP
50-59 years, male
13630.2
GTEX-146FH-1526-SM-5NQBU
50-59 years, female
12874.7
GTEX-U3ZN-0226-SM-3DB8D
30-39 years, female
12835.6
GTEX-12WSL-0226-SM-5CVMJ
50-59 years, male
12718.8
GTEX-S4Z8-0526-SM-4AD4T
60-69 years, male
12567.8
GTEX-VUSG-0126-SM-4KL1X
50-59 years, male
12483.7
GTEX-13PVR-0126-SM-5S2PY
60-69 years, female
11401.6
GTEX-X3Y1-2726-SM-4PQZH
40-49 years, male
11395.1
GTEX-S32W-1926-SM-4AD63
50-59 years, female
11351.8
GTEX-WFON-1726-SM-4LVMQ
40-49 years, male
11323.0
GTEX-YEC4-0826-SM-5P9FV
40-49 years, male
10702.8
GTEX-14E1K-0326-SM-5S2PE
50-59 years, male
10601.0
GTEX-12696-0826-SM-5EGGE
60-69 years, male
10467.9
GTEX-QDVN-0826-SM-48TZ2
50-59 years, male
10464.1
GTEX-132NY-0926-SM-5P9G3
60-69 years, male
10336.8
GTEX-Y5LM-0426-SM-4VBRO
40-49 years, female
10321.5
GTEX-ZF29-2026-SM-4WWB7
60-69 years, female
10150.2
GTEX-UPK5-1426-SM-4JBHH
40-49 years, male
9823.8
GTEX-139YR-0226-SM-5IFEM
50-59 years, male
9734.0
GTEX-WQUQ-1926-SM-4OOSA
60-69 years, male
9635.6
GTEX-13FTW-1126-SM-5J2NV
40-49 years, male
9326.1
GTEX-QEL4-1226-SM-447A4
50-59 years, male
9273.1
GTEX-RM2N-1926-SM-48FCU
50-59 years, male
8863.6
GTEX-ZZPU-0426-SM-5GZYH
50-59 years, female
8409.5
GTEX-ZVP2-0626-SM-51MSO
50-59 years, male
8372.4
GTEX-131XE-0326-SM-5LZVO
50-59 years, male
8271.8
GTEX-OOBJ-0826-SM-3NB2K
60-69 years, male
8061.3
GTEX-13NZ9-1326-SM-5MR3V
50-59 years, male
7972.1
GTEX-QV44-0326-SM-4R1KD
50-59 years, male
7857.2
GTEX-ZF2S-3026-SM-4WWCH
50-59 years, female
7836.3
GTEX-11DXZ-0126-SM-5EGGY
50-59 years, male
7833.8
GTEX-WYVS-1926-SM-4PQZ2
40-49 years, female
7776.8
GTEX-12WSG-0626-SM-5FQTQ
50-59 years, female
7165.4
GTEX-14C38-1526-SM-5RQJ7
50-59 years, male
7120.0
GTEX-12KS4-1326-SM-5LUB3
30-39 years, male
7052.0
GTEX-145MO-2326-SM-5NQ9K
60-69 years, male
6594.9
GTEX-1399R-1226-SM-5P9GF
30-39 years, male
6303.0
GTEX-Q734-0326-SM-48U15
40-49 years, female
6282.1
GTEX-YB5E-0326-SM-5IFHU
40-49 years, male
6274.6
GTEX-P78B-1326-SM-3P611
40-49 years, female
6071.1
GTEX-X4XY-1626-SM-46MVN
60-69 years, male
5827.6
GTEX-S33H-1626-SM-4AD68
30-39 years, male
5734.5
GTEX-11EQ9-0526-SM-5A5JZ
30-39 years, male
5727.4
GTEX-14753-1626-SM-5NQ9L
60-69 years, male
5430.5
GTEX-ZTPG-1426-SM-51MT3
20-29 years, female
5392.8
GTEX-PX3G-0826-SM-48TZS
20-29 years, female
5284.6
GTEX-139TS-1426-SM-5IFJD
60-69 years, male
5272.0
GTEX-ZAB5-0426-SM-5CVMI
50-59 years, male
5186.1
GTEX-UPIC-0926-SM-4IHLV
20-29 years, female
5078.0
GTEX-XOTO-0826-SM-4B65O
50-59 years, male
4790.3
GTEX-RU72-1426-SM-46MUF
50-59 years, female
4590.5
GTEX-YFC4-1526-SM-5IFJS
40-49 years, female
4542.9
GTEX-R53T-0326-SM-48FEC
50-59 years, female
4475.7
GTEX-13113-1326-SM-5GCOI
60-69 years, female
4387.8
GTEX-13N2G-0926-SM-5IFGJ
60-69 years, male
4379.8
GTEX-REY6-1226-SM-48FDR
60-69 years, male
4334.8
GTEX-1212Z-0226-SM-59HLF
60-69 years, male
4330.3
GTEX-1269C-0626-SM-5FQSS
60-69 years, female
4289.9
GTEX-145MF-0826-SM-5QGQA
50-59 years, male
4247.7
GTEX-14DAQ-1726-SM-5S2R2
60-69 years, female
4189.8
GTEX-1399T-0826-SM-5IFES
60-69 years, male
4180.5
GTEX-X261-1726-SM-4PQYT
50-59 years, male
4117.7
GTEX-13FLV-0326-SM-5N9DJ
50-59 years, male
3942.9
GTEX-14AS3-0126-SM-5Q5F4
40-49 years, female
3864.6
GTEX-UTHO-2426-SM-4JBHD
60-69 years, male
3821.0
GTEX-11ZVC-0726-SM-5FQT9
50-59 years, female
3815.5
GTEX-13NZB-0626-SM-5IFH6
30-39 years, male
3802.8
GTEX-ZYY3-0626-SM-5NQ6W
60-69 years, female
3736.0
GTEX-Y5V5-0926-SM-4VBPZ
60-69 years, female
3712.7
GTEX-147F4-1426-SM-5LUA8
50-59 years, male
3677.2
GTEX-11WQC-0726-SM-5EQMR
60-69 years, male
3543.6
GTEX-139TU-0826-SM-5IJFG
60-69 years, male
3521.6
GTEX-147JS-1126-SM-5RQIW
60-69 years, male
3496.3
GTEX-RTLS-1326-SM-46MUN
60-69 years, female
3071.1
GTEX-1497J-0726-SM-5Q5D1
60-69 years, male
3058.1
GTEX-12WSD-1426-SM-5GCN9
60-69 years, female
3013.5
GTEX-13O3O-1826-SM-5IFGW
60-69 years, female
2974.5
GTEX-RWSA-1426-SM-47JXA
40-49 years, male
2679.2
GTEX-14A5I-1726-SM-5QGQ5
50-59 years, female
2600.3
GTEX-ZAB4-0826-SM-5LU9D
40-49 years, male
2596.4
GTEX-13OW6-2626-SM-5IFF2
50-59 years, male
2564.2
GTEX-ZYT6-0626-SM-5E45V
30-39 years, male
2557.8
GTEX-13SLX-1226-SM-5S2Q6
50-59 years, female
2519.9
GTEX-X4EP-1026-SM-4QAS5
60-69 years, female
2488.0
GTEX-X4EO-1126-SM-4QARQ
60-69 years, female
2398.7
GTEX-ZVT4-0626-SM-5E45T
50-59 years, female
2167.6
GTEX-11OF3-0726-SM-5BC4Z
60-69 years, male
2120.3
GTEX-YECK-1926-SM-4W21H
60-69 years, male
2114.5
GTEX-11DXY-0526-SM-5EGGQ
60-69 years, male
1869.4
GTEX-145LU-1326-SM-5LU9N
50-59 years, male
1846.6
GTEX-13QJC-0726-SM-5RQJK
60-69 years, female
1804.9
GTEX-Q2AG-1126-SM-48U1P
40-49 years, female
1792.7
GTEX-XBEC-1526-SM-4AT68
50-59 years, male
1736.2
GTEX-11GSP-0626-SM-5986T
60-69 years, female
1634.4
GTEX-131XH-0626-SM-5LZWH
50-59 years, male
1577.0
GTEX-ZVT3-1626-SM-5GU66
60-69 years, female
1553.3
GTEX-11ZTS-1426-SM-5EQMM
60-69 years, female
1541.2
GTEX-RN64-1826-SM-48FDV
50-59 years, male
1422.5
GTEX-QESD-2026-SM-447BI
20-29 years, male
1415.4
GTEX-13VXU-0926-SM-5IFFH
50-59 years, male
1409.5
GTEX-12WSM-0726-SM-5GCOW
60-69 years, male
1402.3
GTEX-131YS-1626-SM-5HL6C
60-69 years, female
1284.4
GTEX-SJXC-1226-SM-4DM78
60-69 years, male
1270.5
GTEX-13NYB-1026-SM-5IFH3
40-49 years, male
1266.3
GTEX-13112-1426-SM-5EGH8
50-59 years, male
1236.1
GTEX-T6MN-1226-SM-3NMA5
50-59 years, male
1168.3
GTEX-13N11-0926-SM-5IJG2
50-59 years, female
1146.6
GTEX-13FTZ-0726-SM-5IFFY
60-69 years, male
1136.6
GTEX-12WSI-0226-SM-5GCNA
50-59 years, male
1126.1
GTEX-11NUK-1226-SM-5P9GM
50-59 years, male
1087.5
GTEX-11NV4-1326-SM-5HL6V
60-69 years, male
1030.2
GTEX-QEG4-1826-SM-4R1JN
30-39 years, male
975.8
GTEX-RNOR-1426-SM-48FDJ
50-59 years, female
865.6
GTEX-WZTO-0626-SM-4PQYY
40-49 years, male
798.7
GTEX-11ZUS-2526-SM-59872
30-39 years, male
494.3
GTEX-12ZZZ-1326-SM-59HKW
60-69 years, male
288.0
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.