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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 21788.3
Min RPKM: 0.4
Std RPKM: 5626.9
Median RPKM: 5552.5
GTEX-S341-1226-SM-4AD5S
40-49 years, female
21788.3
GTEX-ZZPU-2226-SM-5EGIV
50-59 years, female
20237.2
GTEX-Y3IK-2226-SM-4YCD4
50-59 years, female
18965.8
GTEX-ZLWG-1126-SM-4WWFQ
50-59 years, female
18354.8
GTEX-ZVT2-0626-SM-5GICR
50-59 years, female
15836.7
GTEX-11I78-2026-SM-5987C
50-59 years, female
15687.3
GTEX-TML8-1126-SM-4DXSS
40-49 years, female
15005.9
GTEX-11VI4-0726-SM-5GU5B
40-49 years, female
13840.2
GTEX-QVJO-2526-SM-4R1KB
60-69 years, female
13733.6
GTEX-UPIC-1426-SM-4IHLQ
20-29 years, female
13375.8
GTEX-S7SF-1426-SM-4AT5A
20-29 years, female
13336.5
GTEX-PWCY-1726-SM-48TD3
20-29 years, female
13301.5
GTEX-132AR-1626-SM-5EGHP
50-59 years, female
12971.4
GTEX-145ME-1426-SM-5RQJS
40-49 years, female
12738.0
GTEX-14AS3-1726-SM-5RQJV
40-49 years, female
12574.8
GTEX-13QBU-1726-SM-5IJFQ
40-49 years, female
12542.7
GTEX-T6MO-1226-SM-4DM5S
40-49 years, female
11913.6
GTEX-U3ZN-0926-SM-4DXTU
30-39 years, female
11867.7
GTEX-11XUK-1326-SM-5EQM4
40-49 years, female
11454.8
GTEX-YJ8O-1226-SM-5P9JE
40-49 years, female
11416.7
GTEX-SE5C-1126-SM-4BRWZ
40-49 years, female
11200.1
GTEX-13D11-1326-SM-5IJFY
50-59 years, female
10734.3
GTEX-P78B-2226-SM-3P5ZZ
40-49 years, female
10668.1
GTEX-1117F-2526-SM-5GZY6
60-69 years, female
10482.8
GTEX-13PL7-2726-SM-5L3GB
60-69 years, female
10436.1
GTEX-1399U-1526-SM-5J2N7
50-59 years, female
10332.3
GTEX-OHPK-2526-SM-3MJH9
50-59 years, female
9881.5
GTEX-NL3G-2526-SM-4SOIE
60-69 years, female
9781.8
GTEX-11EMC-1926-SM-5A5JU
60-69 years, female
9752.8
GTEX-XUJ4-1626-SM-4BONV
60-69 years, female
9583.8
GTEX-11P81-2126-SM-5HL6N
30-39 years, female
9526.9
GTEX-14BMU-1926-SM-5S2QC
20-29 years, female
9451.4
GTEX-N7MT-1926-SM-3LK5N
60-69 years, female
8974.3
GTEX-S4P3-1126-SM-4AD52
50-59 years, female
8515.9
GTEX-ZC5H-2226-SM-4WAWS
40-49 years, female
8411.6
GTEX-12WSB-2426-SM-5EGJC
60-69 years, female
8315.2
GTEX-ZP4G-0826-SM-4WWF3
20-29 years, female
8145.7
GTEX-1399S-2326-SM-5K7YV
30-39 years, female
8052.4
GTEX-QCQG-1226-SM-48U23
50-59 years, female
7548.5
GTEX-ZXES-0626-SM-5E45P
30-39 years, female
7485.7
GTEX-PX3G-2526-SM-48TZV
20-29 years, female
7182.2
GTEX-14A5I-2726-SM-5SIB3
50-59 years, female
6900.0
GTEX-X15G-1926-SM-4PQZQ
50-59 years, female
6703.6
GTEX-XUW1-0326-SM-4BOOR
50-59 years, female
6618.3
GTEX-11DXX-1726-SM-5H11T
60-69 years, female
6025.0
GTEX-11TTK-2726-SM-5GU58
60-69 years, female
5950.6
GTEX-ZAJG-2926-SM-5HL8P
50-59 years, female
5746.7
GTEX-PWN1-2526-SM-48TDS
40-49 years, female
5635.3
GTEX-146FH-2626-SM-5Q5E1
50-59 years, female
5469.6
GTEX-TMMY-1926-SM-4DXUU
40-49 years, female
5329.6
GTEX-113JC-1926-SM-5N9GE
50-59 years, female
4759.6
GTEX-131XG-2126-SM-5DUXG
50-59 years, female
4613.6
GTEX-ZYY3-2626-SM-5N9DH
60-69 years, female
4606.9
GTEX-ZTPG-2226-SM-57WF9
20-29 years, female
4451.3
GTEX-ZGAY-2226-SM-4YCCX
40-49 years, female
3820.4
GTEX-T2IS-1926-SM-4DM74
20-29 years, female
3790.0
GTEX-P4PP-2526-SM-3P61P
30-39 years, female
3726.8
GTEX-X8HC-2826-SM-46MWJ
50-59 years, female
3143.4
GTEX-13PVR-1426-SM-5S2PW
60-69 years, female
3134.4
GTEX-PWOO-2026-SM-48TDE
40-49 years, female
2882.5
GTEX-QDT8-2526-SM-48TYX
30-39 years, female
2813.5
GTEX-PLZ4-2726-SM-3P61A
50-59 years, female
2708.7
GTEX-13U4I-2026-SM-5LU3L
40-49 years, female
2600.3
GTEX-13QIC-1826-SM-5J1MY
60-69 years, female
2169.5
GTEX-OHPL-2526-SM-3MJGT
60-69 years, female
1590.3
GTEX-RWS6-1726-SM-47JXP
60-69 years, female
1442.2
GTEX-XV7Q-1626-SM-4BRWC
40-49 years, female
1211.7
GTEX-ZE7O-2426-SM-57WD7
50-59 years, female
1210.2
GTEX-TSE9-2526-SM-4DXUS
60-69 years, female
858.4
GTEX-131YS-2426-SM-5J2OD
60-69 years, female
855.8
GTEX-146FR-2426-SM-5NQAU
60-69 years, female
344.5
GTEX-14DAQ-2326-SM-5S2QX
60-69 years, female
343.3
GTEX-UJHI-1326-SM-4IHJO
50-59 years, female
199.3
GTEX-ZYVF-0326-SM-5GIES
50-59 years, female
126.7
GTEX-ZVT3-2726-SM-5GU5X
60-69 years, female
116.9
GTEX-ZYWO-2026-SM-5GIDA
40-49 years, female
74.7
GTEX-ZQG8-1126-SM-51MRL
60-69 years, female
43.0
GTEX-Y8LW-1426-SM-5RQJJ
50-59 years, female
26.8
GTEX-Q734-1426-SM-48TZQ
40-49 years, female
19.7
GTEX-12WSJ-1326-SM-5GCOB
40-49 years, female
15.3
GTEX-W5WG-1026-SM-4LMIF
50-59 years, female
15.0
GTEX-147F3-1526-SM-5SIAK
50-59 years, female
14.8
GTEX-S4UY-1326-SM-4AD4X
40-49 years, female
11.2
GTEX-ZV6S-1326-SM-59HJA
40-49 years, female
9.0
GTEX-12ZZX-1926-SM-5EGKC
40-49 years, female
6.4
GTEX-YFC4-2926-SM-5IFJ8
40-49 years, female
5.9
GTEX-13W3W-2326-SM-5LU4Y
60-69 years, female
5.6
GTEX-WEY5-0826-SM-4LMIH
40-49 years, female
4.1
GTEX-WRHU-2926-SM-4MVNQ
50-59 years, female
3.5
GTEX-11EM3-1826-SM-5A5KO
20-29 years, female
2.9
GTEX-12WSD-2926-SM-5LZUH
60-69 years, female
2.6
GTEX-11GSP-2226-SM-5HL5Q
60-69 years, female
2.4
GTEX-RU1J-1426-SM-46MUV
20-29 years, female
1.8
GTEX-Y114-1926-SM-4TT8J
50-59 years, female
0.6
GTEX-13OVI-0926-SM-5J1MI
60-69 years, female
0.5
GTEX-13N11-1526-SM-5L3FL
50-59 years, female
0.4
Show all
VAGINA - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.