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RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 826.2
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 1065.4
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 636.9
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 818.5
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 874.1
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 678.4
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 928.2
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 1347.7
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 222.8
Min RPKM: 2.2
Std RPKM: 54.1
Median RPKM: 67.5
GTEX-139TS-1426-SM-5IFJD
60-69 years, male
222.8
GTEX-QESD-2026-SM-447BI
20-29 years, male
210.4
GTEX-1399T-0826-SM-5IFES
60-69 years, male
207.0
GTEX-ZYT6-0626-SM-5E45V
30-39 years, male
202.8
GTEX-YFC4-1526-SM-5IFJS
40-49 years, female
202.6
GTEX-1399R-1226-SM-5P9GF
30-39 years, male
193.8
GTEX-13SLX-1226-SM-5S2Q6
50-59 years, female
186.0
GTEX-145MF-0826-SM-5QGQA
50-59 years, male
180.2
GTEX-12WSD-1426-SM-5GCN9
60-69 years, female
180.1
GTEX-1212Z-0226-SM-59HLF
60-69 years, male
179.8
GTEX-11DXZ-0126-SM-5EGGY
50-59 years, male
172.1
GTEX-ZF2S-3026-SM-4WWCH
50-59 years, female
164.7
GTEX-13FLV-0326-SM-5N9DJ
50-59 years, male
159.3
GTEX-14AS3-0126-SM-5Q5F4
40-49 years, female
151.6
GTEX-T6MN-1226-SM-3NMA5
50-59 years, male
150.8
GTEX-13112-1426-SM-5EGH8
50-59 years, male
145.3
GTEX-147JS-1126-SM-5RQIW
60-69 years, male
143.5
GTEX-13VXU-0926-SM-5IFFH
50-59 years, male
143.3
GTEX-XOTO-0826-SM-4B65O
50-59 years, male
139.4
GTEX-R53T-0326-SM-48FEC
50-59 years, female
137.4
GTEX-13FTZ-0726-SM-5IFFY
60-69 years, male
137.2
GTEX-PX3G-0826-SM-48TZS
20-29 years, female
136.9
GTEX-P78B-1326-SM-3P611
40-49 years, female
130.1
GTEX-TKQ2-1726-SM-4DXUP
50-59 years, male
127.7
GTEX-X4EO-1126-SM-4QARQ
60-69 years, female
122.5
GTEX-11NV4-1326-SM-5HL6V
60-69 years, male
119.3
GTEX-QEG4-1826-SM-4R1JN
30-39 years, male
119.2
GTEX-YECK-1926-SM-4W21H
60-69 years, male
114.1
GTEX-YB5E-0326-SM-5IFHU
40-49 years, male
111.0
GTEX-11OF3-0726-SM-5BC4Z
60-69 years, male
109.1
GTEX-14DAQ-1726-SM-5S2R2
60-69 years, female
107.9
GTEX-11NUK-1226-SM-5P9GM
50-59 years, male
107.2
GTEX-ZAB5-0426-SM-5CVMI
50-59 years, male
107.1
GTEX-147F4-1426-SM-5LUA8
50-59 years, male
106.8
GTEX-RN64-1826-SM-48FDV
50-59 years, male
105.2
GTEX-11DXY-0526-SM-5EGGQ
60-69 years, male
97.8
GTEX-U3ZN-0226-SM-3DB8D
30-39 years, female
97.4
GTEX-13OW6-2626-SM-5IFF2
50-59 years, male
96.2
GTEX-12WSI-0226-SM-5GCNA
50-59 years, male
93.6
GTEX-WZTO-0626-SM-4PQYY
40-49 years, male
92.4
GTEX-SJXC-1226-SM-4DM78
60-69 years, male
91.7
GTEX-11WQC-0726-SM-5EQMR
60-69 years, male
88.7
GTEX-RWSA-1426-SM-47JXA
40-49 years, male
84.4
GTEX-OOBJ-0826-SM-3NB2K
60-69 years, male
83.1
GTEX-ZPU1-0826-SM-57WG2
40-49 years, male
79.1
GTEX-13NZ9-1326-SM-5MR3V
50-59 years, male
76.7
GTEX-ZVT3-1626-SM-5GU66
60-69 years, female
76.5
GTEX-Y5V5-0926-SM-4VBPZ
60-69 years, female
76.3
GTEX-11ZTS-1426-SM-5EQMM
60-69 years, female
75.5
GTEX-RNOR-1426-SM-48FDJ
50-59 years, female
73.0
GTEX-131YS-1626-SM-5HL6C
60-69 years, female
72.3
GTEX-11GSP-0626-SM-5986T
60-69 years, female
72.2
GTEX-X3Y1-2726-SM-4PQZH
40-49 years, male
71.5
GTEX-UPK5-1426-SM-4JBHH
40-49 years, male
70.4
GTEX-145LU-1326-SM-5LU9N
50-59 years, male
70.0
GTEX-ZVT4-0626-SM-5E45T
50-59 years, female
69.1
GTEX-12WSM-0726-SM-5GCOW
60-69 years, male
68.7
GTEX-RM2N-1926-SM-48FCU
50-59 years, male
68.7
GTEX-14753-1626-SM-5NQ9L
60-69 years, male
68.4
GTEX-WFON-1726-SM-4LVMQ
40-49 years, male
67.5
GTEX-RTLS-1326-SM-46MUN
60-69 years, female
65.7
GTEX-131XH-0626-SM-5LZWH
50-59 years, male
64.4
GTEX-WYVS-1926-SM-4PQZ2
40-49 years, female
64.0
GTEX-11EQ9-0526-SM-5A5JZ
30-39 years, male
63.5
GTEX-11ZVC-0726-SM-5FQT9
50-59 years, female
62.3
GTEX-ZF29-2026-SM-4WWB7
60-69 years, female
62.0
GTEX-13NYB-1026-SM-5IFH3
40-49 years, male
61.4
GTEX-QV44-0326-SM-4R1KD
50-59 years, male
59.6
GTEX-139TU-0826-SM-5IJFG
60-69 years, male
59.1
GTEX-S4Z8-0526-SM-4AD4T
60-69 years, male
58.0
GTEX-UPIC-0926-SM-4IHLV
20-29 years, female
57.4
GTEX-11ZUS-2526-SM-59872
30-39 years, male
55.0
GTEX-132NY-0926-SM-5P9G3
60-69 years, male
54.8
GTEX-13FTW-1126-SM-5J2NV
40-49 years, male
52.2
GTEX-12KS4-1326-SM-5LUB3
30-39 years, male
51.7
GTEX-ZZPU-0426-SM-5GZYH
50-59 years, female
51.1
GTEX-REY6-1226-SM-48FDR
60-69 years, male
48.4
GTEX-XBEC-1526-SM-4AT68
50-59 years, male
47.7
GTEX-Q734-0326-SM-48U15
40-49 years, female
47.0
GTEX-YEC4-0826-SM-5P9FV
40-49 years, male
46.7
GTEX-Q2AG-1126-SM-48U1P
40-49 years, female
46.5
GTEX-14E1K-0326-SM-5S2PE
50-59 years, male
45.9
GTEX-S33H-1626-SM-4AD68
30-39 years, male
45.8
GTEX-13O3O-1826-SM-5IFGW
60-69 years, female
45.7
GTEX-RU72-1426-SM-46MUF
50-59 years, female
45.7
GTEX-VUSG-0126-SM-4KL1X
50-59 years, male
45.4
GTEX-Z9EW-0426-SM-5CVM9
40-49 years, male
44.0
GTEX-13QJC-0726-SM-5RQJK
60-69 years, female
43.2
GTEX-QEL4-1226-SM-447A4
50-59 years, male
41.5
GTEX-13PVR-0126-SM-5S2PY
60-69 years, female
40.1
GTEX-Y5LM-0426-SM-4VBRO
40-49 years, female
39.7
GTEX-139YR-0226-SM-5IFEM
50-59 years, male
34.3
GTEX-13113-1326-SM-5GCOI
60-69 years, female
32.2
GTEX-ZVP2-0626-SM-51MSO
50-59 years, male
28.1
GTEX-144GM-1326-SM-5LU5E
20-29 years, male
27.7
GTEX-13NZB-0626-SM-5IFH6
30-39 years, male
25.1
GTEX-12696-0826-SM-5EGGE
60-69 years, male
24.1
GTEX-14C38-1526-SM-5RQJ7
50-59 years, male
23.9
GTEX-12WSG-0626-SM-5FQTQ
50-59 years, female
23.6
GTEX-13N2G-0926-SM-5IFGJ
60-69 years, male
23.2
GTEX-X261-1726-SM-4PQYT
50-59 years, male
23.1
GTEX-12ZZZ-1326-SM-59HKW
60-69 years, male
22.0
GTEX-1269C-0626-SM-5FQSS
60-69 years, female
21.8
GTEX-146FH-1526-SM-5NQBU
50-59 years, female
21.4
GTEX-UTHO-2426-SM-4JBHD
60-69 years, male
20.3
GTEX-ZTPG-1426-SM-51MT3
20-29 years, female
19.7
GTEX-X4EP-1026-SM-4QAS5
60-69 years, female
19.0
GTEX-12WSL-0226-SM-5CVMJ
50-59 years, male
15.1
GTEX-131XE-0326-SM-5LZVO
50-59 years, male
14.4
GTEX-1497J-0726-SM-5Q5D1
60-69 years, male
14.2
GTEX-ZAB4-0826-SM-5LU9D
40-49 years, male
13.3
GTEX-X4XY-1626-SM-46MVN
60-69 years, male
13.2
GTEX-14A5I-1726-SM-5QGQ5
50-59 years, female
13.0
GTEX-145MO-2326-SM-5NQ9K
60-69 years, male
10.6
GTEX-13N11-0926-SM-5IJG2
50-59 years, female
7.7
GTEX-WQUQ-1926-SM-4OOSA
60-69 years, male
6.6
GTEX-ZYY3-0626-SM-5NQ6W
60-69 years, female
5.9
GTEX-S32W-1926-SM-4AD63
50-59 years, female
5.7
GTEX-QDVN-0826-SM-48TZ2
50-59 years, male
2.2
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.