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JAGN1
COLON - Expression summary
RNA expressioni
HPA:21.1TPM
GTEx:15.9RPKM
FANTOM5:48.8Tags Per Million

COLON - Annotated protein expression
Pending normal tissue analysis

COLON - HPA RNA-seqi
Average TPM 21.1
overview Male, age 54 Sample 1
TPM: 20.4
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 18.6
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 15.6
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 22
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 15.5
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 23.9
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 30.9
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 25.7
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 19.4
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 21.9
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 22.1
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 20.2
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 18.8
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seqi
Average RPKM 15.9
GTEx sample id Sample description RPKM
Colon - Sigmoid
RPKM: 14.4
Samples: 149

Max RPKM: 25.3
Min RPKM: 6.5
Std RPKM: 3.5
Median RPKM: 14.4
GTEX-1399U-2226-SM-5KLZI 50-59 years, female 25.3
GTEX-11TT1-0926-SM-5GU5M 20-29 years, male 23.5
GTEX-ZPCL-1626-SM-57WGC 60-69 years, female 22.9
GTEX-13FH7-1626-SM-5J2O9 50-59 years, female 21.5
GTEX-ZT9W-1726-SM-51MS3 50-59 years, male 21.4
GTEX-ZLV1-1326-SM-4WWER 60-69 years, female 20.6
GTEX-ZLFU-1426-SM-4WWEU 40-49 years, male 20.4
GTEX-ZXES-1726-SM-5E43G 30-39 years, female 19.9
GTEX-WFG8-1726-SM-4LVM6 20-29 years, male 19.8
GTEX-1339X-1726-SM-5P9J9 40-49 years, male 19.7
Show all
Colon - Transverse
RPKM: 17.0
Samples: 196

Max RPKM: 31.0
Min RPKM: 5.1
Std RPKM: 4.0
Median RPKM: 17.1
GTEX-11TT1-1026-SM-5PNW7 20-29 years, male 31.0
GTEX-14E6E-1526-SM-5RQIG 30-39 years, male 27.4
GTEX-1399R-2226-SM-5P9JB 30-39 years, male 27.2
GTEX-Y5LM-1526-SM-4VDTA 40-49 years, female 25.7
GTEX-131XG-1826-SM-5LZV4 50-59 years, female 25.4
GTEX-QDVN-1326-SM-48TZ3 50-59 years, male 25.1
GTEX-O5YT-1426-SM-3MJHC 20-29 years, male 25.0
GTEX-111CU-1426-SM-5GZYP 50-59 years, male 24.5
GTEX-144GN-1126-SM-5LU33 50-59 years, male 24.2
GTEX-146FQ-1926-SM-5NQBY 30-39 years, male 24.1
Show all

COLON - FANTOM5 CAGEi
Average Tags Per Million 48.8
FANTOM5 sample id Sample description Tags Per Million
Colon
Tags Per Million: 35.8
FF:10014-101C5 62,83,84 years, mixed 48.8

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.