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RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 23.3
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 7.9
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 14.8
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 27.3
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 16.1
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 44.3
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 23.6
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 41.1
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 54.5
Min RPKM: 2.2
Std RPKM: 10.7
Median RPKM: 19.6
GTEX-13SLX-1226-SM-5S2Q6
50-59 years, female
54.5
GTEX-SJXC-1226-SM-4DM78
60-69 years, male
46.8
GTEX-Q2AG-1126-SM-48U1P
40-49 years, female
45.2
GTEX-PX3G-0826-SM-48TZS
20-29 years, female
43.3
GTEX-Y5V5-0926-SM-4VBPZ
60-69 years, female
42.2
GTEX-11WQC-0726-SM-5EQMR
60-69 years, male
41.6
GTEX-11NV4-1326-SM-5HL6V
60-69 years, male
40.5
GTEX-145LU-1326-SM-5LU9N
50-59 years, male
39.3
GTEX-131XH-0626-SM-5LZWH
50-59 years, male
38.9
GTEX-14A5I-1726-SM-5QGQ5
50-59 years, female
37.4
GTEX-12WSM-0726-SM-5GCOW
60-69 years, male
36.3
GTEX-R53T-0326-SM-48FEC
50-59 years, female
36.1
GTEX-139TS-1426-SM-5IFJD
60-69 years, male
35.7
GTEX-YECK-1926-SM-4W21H
60-69 years, male
35.3
GTEX-1212Z-0226-SM-59HLF
60-69 years, male
34.9
GTEX-1399R-1226-SM-5P9GF
30-39 years, male
34.9
GTEX-13N11-0926-SM-5IJG2
50-59 years, female
34.4
GTEX-P78B-1326-SM-3P611
40-49 years, female
34.1
GTEX-139TU-0826-SM-5IJFG
60-69 years, male
33.6
GTEX-ZVT3-1626-SM-5GU66
60-69 years, female
33.2
GTEX-11DXY-0526-SM-5EGGQ
60-69 years, male
33.1
GTEX-1269C-0626-SM-5FQSS
60-69 years, female
32.4
GTEX-T6MN-1226-SM-3NMA5
50-59 years, male
30.8
GTEX-14DAQ-1726-SM-5S2R2
60-69 years, female
29.3
GTEX-13N2G-0926-SM-5IFGJ
60-69 years, male
29.0
GTEX-RN64-1826-SM-48FDV
50-59 years, male
27.5
GTEX-XBEC-1526-SM-4AT68
50-59 years, male
27.2
GTEX-RNOR-1426-SM-48FDJ
50-59 years, female
26.8
GTEX-147JS-1126-SM-5RQIW
60-69 years, male
26.4
GTEX-13PVR-0126-SM-5S2PY
60-69 years, female
26.2
GTEX-14753-1626-SM-5NQ9L
60-69 years, male
26.2
GTEX-ZVP2-0626-SM-51MSO
50-59 years, male
25.6
GTEX-13QJC-0726-SM-5RQJK
60-69 years, female
25.4
GTEX-13FLV-0326-SM-5N9DJ
50-59 years, male
25.1
GTEX-13VXU-0926-SM-5IFFH
50-59 years, male
25.1
GTEX-X4EO-1126-SM-4QARQ
60-69 years, female
25.0
GTEX-ZF2S-3026-SM-4WWCH
50-59 years, female
24.8
GTEX-13NYB-1026-SM-5IFH3
40-49 years, male
24.5
GTEX-1399T-0826-SM-5IFES
60-69 years, male
24.3
GTEX-QV44-0326-SM-4R1KD
50-59 years, male
24.2
GTEX-14AS3-0126-SM-5Q5F4
40-49 years, female
24.1
GTEX-145MF-0826-SM-5QGQA
50-59 years, male
23.9
GTEX-11ZUS-2526-SM-59872
30-39 years, male
23.4
GTEX-YFC4-1526-SM-5IFJS
40-49 years, female
23.4
GTEX-132NY-0926-SM-5P9G3
60-69 years, male
22.8
GTEX-13FTW-1126-SM-5J2NV
40-49 years, male
22.6
GTEX-X261-1726-SM-4PQYT
50-59 years, male
22.6
GTEX-11NUK-1226-SM-5P9GM
50-59 years, male
22.3
GTEX-ZYT6-0626-SM-5E45V
30-39 years, male
22.3
GTEX-11ZVC-0726-SM-5FQT9
50-59 years, female
22.0
GTEX-X4EP-1026-SM-4QAS5
60-69 years, female
21.7
GTEX-12WSI-0226-SM-5GCNA
50-59 years, male
21.1
GTEX-147F4-1426-SM-5LUA8
50-59 years, male
20.9
GTEX-ZPU1-0826-SM-57WG2
40-49 years, male
20.8
GTEX-WZTO-0626-SM-4PQYY
40-49 years, male
20.5
GTEX-1497J-0726-SM-5Q5D1
60-69 years, male
20.2
GTEX-OOBJ-0826-SM-3NB2K
60-69 years, male
20.2
GTEX-ZVT4-0626-SM-5E45T
50-59 years, female
20.2
GTEX-11OF3-0726-SM-5BC4Z
60-69 years, male
20.1
GTEX-13FTZ-0726-SM-5IFFY
60-69 years, male
19.6
GTEX-13OW6-2626-SM-5IFF2
50-59 years, male
19.4
GTEX-S4Z8-0526-SM-4AD4T
60-69 years, male
19.2
GTEX-ZZPU-0426-SM-5GZYH
50-59 years, female
18.9
GTEX-RM2N-1926-SM-48FCU
50-59 years, male
18.8
GTEX-13112-1426-SM-5EGH8
50-59 years, male
18.7
GTEX-UPK5-1426-SM-4JBHH
40-49 years, male
18.7
GTEX-RU72-1426-SM-46MUF
50-59 years, female
18.6
GTEX-Q734-0326-SM-48U15
40-49 years, female
18.2
GTEX-13NZ9-1326-SM-5MR3V
50-59 years, male
18.1
GTEX-WYVS-1926-SM-4PQZ2
40-49 years, female
17.5
GTEX-UPIC-0926-SM-4IHLV
20-29 years, female
16.6
GTEX-11EQ9-0526-SM-5A5JZ
30-39 years, male
16.4
GTEX-146FH-1526-SM-5NQBU
50-59 years, female
16.4
GTEX-14E1K-0326-SM-5S2PE
50-59 years, male
16.3
GTEX-ZF29-2026-SM-4WWB7
60-69 years, female
16.3
GTEX-12WSD-1426-SM-5GCN9
60-69 years, female
16.1
GTEX-13O3O-1826-SM-5IFGW
60-69 years, female
15.7
GTEX-QEG4-1826-SM-4R1JN
30-39 years, male
15.7
GTEX-S33H-1626-SM-4AD68
30-39 years, male
15.6
GTEX-QESD-2026-SM-447BI
20-29 years, male
15.5
GTEX-145MO-2326-SM-5NQ9K
60-69 years, male
15.1
GTEX-YEC4-0826-SM-5P9FV
40-49 years, male
15.1
GTEX-12ZZZ-1326-SM-59HKW
60-69 years, male
14.8
GTEX-YB5E-0326-SM-5IFHU
40-49 years, male
14.7
GTEX-ZAB5-0426-SM-5CVMI
50-59 years, male
14.4
GTEX-11DXZ-0126-SM-5EGGY
50-59 years, male
14.1
GTEX-RWSA-1426-SM-47JXA
40-49 years, male
13.7
GTEX-Y5LM-0426-SM-4VBRO
40-49 years, female
13.5
GTEX-11ZTS-1426-SM-5EQMM
60-69 years, female
13.4
GTEX-12WSG-0626-SM-5FQTQ
50-59 years, female
13.2
GTEX-WQUQ-1926-SM-4OOSA
60-69 years, male
13.0
GTEX-XOTO-0826-SM-4B65O
50-59 years, male
12.7
GTEX-VUSG-0126-SM-4KL1X
50-59 years, male
12.6
GTEX-X3Y1-2726-SM-4PQZH
40-49 years, male
12.4
GTEX-WFON-1726-SM-4LVMQ
40-49 years, male
12.2
GTEX-11GSP-0626-SM-5986T
60-69 years, female
12.0
GTEX-U3ZN-0226-SM-3DB8D
30-39 years, female
11.4
GTEX-12KS4-1326-SM-5LUB3
30-39 years, male
11.1
GTEX-13NZB-0626-SM-5IFH6
30-39 years, male
11.0
GTEX-13113-1326-SM-5GCOI
60-69 years, female
10.4
GTEX-131YS-1626-SM-5HL6C
60-69 years, female
10.3
GTEX-12696-0826-SM-5EGGE
60-69 years, male
10.2
GTEX-TKQ2-1726-SM-4DXUP
50-59 years, male
10.2
GTEX-139YR-0226-SM-5IFEM
50-59 years, male
9.8
GTEX-QEL4-1226-SM-447A4
50-59 years, male
9.7
GTEX-RTLS-1326-SM-46MUN
60-69 years, female
9.4
GTEX-REY6-1226-SM-48FDR
60-69 years, male
8.6
GTEX-ZYY3-0626-SM-5NQ6W
60-69 years, female
6.6
GTEX-12WSL-0226-SM-5CVMJ
50-59 years, male
5.8
GTEX-UTHO-2426-SM-4JBHD
60-69 years, male
5.6
GTEX-ZAB4-0826-SM-5LU9D
40-49 years, male
5.5
GTEX-Z9EW-0426-SM-5CVM9
40-49 years, male
5.1
GTEX-QDVN-0826-SM-48TZ2
50-59 years, male
4.7
GTEX-S32W-1926-SM-4AD63
50-59 years, female
4.5
GTEX-131XE-0326-SM-5LZVO
50-59 years, male
3.9
GTEX-144GM-1326-SM-5LU5E
20-29 years, male
3.6
GTEX-14C38-1526-SM-5RQJ7
50-59 years, male
3.4
GTEX-X4XY-1626-SM-46MVN
60-69 years, male
3.4
GTEX-ZTPG-1426-SM-51MT3
20-29 years, female
2.2
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.
The Human Protein Atlas project is funded
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Female, age 60
