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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 9669.4
Min RPKM: 0.0
Std RPKM: 1904.3
Median RPKM: 637.5
GTEX-S341-1226-SM-4AD5S
40-49 years, female
9669.4
GTEX-QVJO-2526-SM-4R1KB
60-69 years, female
9180.3
GTEX-ZLWG-1126-SM-4WWFQ
50-59 years, female
9095.3
GTEX-11I78-2026-SM-5987C
50-59 years, female
5548.0
GTEX-OHPK-2526-SM-3MJH9
50-59 years, female
4215.9
GTEX-13D11-1326-SM-5IJFY
50-59 years, female
4145.2
GTEX-11VI4-0726-SM-5GU5B
40-49 years, female
3682.3
GTEX-N7MT-1926-SM-3LK5N
60-69 years, female
3627.6
GTEX-U3ZN-0926-SM-4DXTU
30-39 years, female
3467.2
GTEX-PX3G-2526-SM-48TZV
20-29 years, female
3442.9
GTEX-12WSB-2426-SM-5EGJC
60-69 years, female
3341.5
GTEX-TML8-1126-SM-4DXSS
40-49 years, female
3286.4
GTEX-Y3IK-2226-SM-4YCD4
50-59 years, female
3145.3
GTEX-UPIC-1426-SM-4IHLQ
20-29 years, female
3076.2
GTEX-113JC-1926-SM-5N9GE
50-59 years, female
2975.6
GTEX-ZZPU-2226-SM-5EGIV
50-59 years, female
2933.1
GTEX-NL3G-2526-SM-4SOIE
60-69 years, female
2882.2
GTEX-S7SF-1426-SM-4AT5A
20-29 years, female
2328.6
GTEX-XUJ4-1626-SM-4BONV
60-69 years, female
2298.1
GTEX-XUW1-0326-SM-4BOOR
50-59 years, female
2124.0
GTEX-145ME-1426-SM-5RQJS
40-49 years, female
2053.0
GTEX-QCQG-1226-SM-48U23
50-59 years, female
1932.9
GTEX-ZC5H-2226-SM-4WAWS
40-49 years, female
1855.7
GTEX-ZAJG-2926-SM-5HL8P
50-59 years, female
1854.1
GTEX-T6MO-1226-SM-4DM5S
40-49 years, female
1809.9
GTEX-1399U-1526-SM-5J2N7
50-59 years, female
1539.1
GTEX-YJ8O-1226-SM-5P9JE
40-49 years, female
1502.8
GTEX-PWCY-1726-SM-48TD3
20-29 years, female
1294.3
GTEX-ZYY3-2626-SM-5N9DH
60-69 years, female
1274.6
GTEX-ZVT2-0626-SM-5GICR
50-59 years, female
1254.7
GTEX-X15G-1926-SM-4PQZQ
50-59 years, female
1254.0
GTEX-S4P3-1126-SM-4AD52
50-59 years, female
1214.8
GTEX-1399S-2326-SM-5K7YV
30-39 years, female
1120.3
GTEX-14A5I-2726-SM-5SIB3
50-59 years, female
1082.2
GTEX-13PL7-2726-SM-5L3GB
60-69 years, female
1066.4
GTEX-11TTK-2726-SM-5GU58
60-69 years, female
1031.2
GTEX-1117F-2526-SM-5GZY6
60-69 years, female
996.8
GTEX-PLZ4-2726-SM-3P61A
50-59 years, female
922.2
GTEX-11EMC-1926-SM-5A5JU
60-69 years, female
916.8
GTEX-SE5C-1126-SM-4BRWZ
40-49 years, female
906.8
GTEX-13PVR-1426-SM-5S2PW
60-69 years, female
841.5
GTEX-ZXES-0626-SM-5E45P
30-39 years, female
809.9
GTEX-14BMU-1926-SM-5S2QC
20-29 years, female
802.5
GTEX-ZTPG-2226-SM-57WF9
20-29 years, female
782.5
GTEX-132AR-1626-SM-5EGHP
50-59 years, female
743.8
GTEX-ZGAY-2226-SM-4YCCX
40-49 years, female
691.6
GTEX-11XUK-1326-SM-5EQM4
40-49 years, female
691.5
GTEX-14AS3-1726-SM-5RQJV
40-49 years, female
646.1
GTEX-13QIC-1826-SM-5J1MY
60-69 years, female
628.8
GTEX-131XG-2126-SM-5DUXG
50-59 years, female
599.5
GTEX-X8HC-2826-SM-46MWJ
50-59 years, female
591.3
GTEX-146FH-2626-SM-5Q5E1
50-59 years, female
490.3
GTEX-P78B-2226-SM-3P5ZZ
40-49 years, female
430.4
GTEX-T2IS-1926-SM-4DM74
20-29 years, female
313.4
GTEX-RWS6-1726-SM-47JXP
60-69 years, female
310.0
GTEX-13QBU-1726-SM-5IJFQ
40-49 years, female
303.4
GTEX-QDT8-2526-SM-48TYX
30-39 years, female
282.7
GTEX-PWN1-2526-SM-48TDS
40-49 years, female
231.9
GTEX-P4PP-2526-SM-3P61P
30-39 years, female
227.0
GTEX-XV7Q-1626-SM-4BRWC
40-49 years, female
140.4
GTEX-13U4I-2026-SM-5LU3L
40-49 years, female
121.6
GTEX-TMMY-1926-SM-4DXUU
40-49 years, female
63.2
GTEX-ZE7O-2426-SM-57WD7
50-59 years, female
62.1
GTEX-14DAQ-2326-SM-5S2QX
60-69 years, female
53.0
GTEX-UJHI-1326-SM-4IHJO
50-59 years, female
49.0
GTEX-11DXX-1726-SM-5H11T
60-69 years, female
41.0
GTEX-ZP4G-0826-SM-4WWF3
20-29 years, female
32.9
GTEX-OHPL-2526-SM-3MJGT
60-69 years, female
32.7
GTEX-TSE9-2526-SM-4DXUS
60-69 years, female
29.6
GTEX-11P81-2126-SM-5HL6N
30-39 years, female
21.3
GTEX-146FR-2426-SM-5NQAU
60-69 years, female
19.4
GTEX-ZYWO-2026-SM-5GIDA
40-49 years, female
19.1
GTEX-131YS-2426-SM-5J2OD
60-69 years, female
18.1
GTEX-ZYVF-0326-SM-5GIES
50-59 years, female
11.3
GTEX-ZQG8-1126-SM-51MRL
60-69 years, female
5.6
GTEX-PWOO-2026-SM-48TDE
40-49 years, female
4.8
GTEX-ZV6S-1326-SM-59HJA
40-49 years, female
3.9
GTEX-ZVT3-2726-SM-5GU5X
60-69 years, female
3.6
GTEX-Q734-1426-SM-48TZQ
40-49 years, female
3.0
GTEX-13W3W-2326-SM-5LU4Y
60-69 years, female
2.6
GTEX-S4UY-1326-SM-4AD4X
40-49 years, female
2.4
GTEX-W5WG-1026-SM-4LMIF
50-59 years, female
2.4
GTEX-YFC4-2926-SM-5IFJ8
40-49 years, female
2.3
GTEX-12ZZX-1926-SM-5EGKC
40-49 years, female
2.2
GTEX-11EM3-1826-SM-5A5KO
20-29 years, female
1.5
GTEX-WRHU-2926-SM-4MVNQ
50-59 years, female
1.3
GTEX-Y8LW-1426-SM-5RQJJ
50-59 years, female
1.3
GTEX-147F3-1526-SM-5SIAK
50-59 years, female
1.1
GTEX-WEY5-0826-SM-4LMIH
40-49 years, female
1.0
GTEX-RU1J-1426-SM-46MUV
20-29 years, female
0.9
GTEX-12WSJ-1326-SM-5GCOB
40-49 years, female
0.8
GTEX-11GSP-2226-SM-5HL5Q
60-69 years, female
0.6
GTEX-12WSD-2926-SM-5LZUH
60-69 years, female
0.6
GTEX-13OVI-0926-SM-5J1MI
60-69 years, female
0.1
GTEX-Y114-1926-SM-4TT8J
50-59 years, female
0.1
GTEX-13N11-1526-SM-5L3FL
50-59 years, female
0.0
Show all
VAGINA - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.