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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 793.3
Min RPKM: 9.2
Std RPKM: 227.9
Median RPKM: 410.2
GTEX-11EQ9-1326-SM-5985X
30-39 years, male
793.3
GTEX-13FTW-2026-SM-5IJE2
40-49 years, male
778.0
GTEX-YB5E-1526-SM-5IFIE
40-49 years, male
766.2
GTEX-XGQ4-1326-SM-4GIDU
50-59 years, male
753.1
GTEX-139YR-2226-SM-5IFFW
50-59 years, male
748.0
GTEX-ZTX8-0526-SM-59HLD
20-29 years, male
738.5
GTEX-111YS-1426-SM-5GID8
60-69 years, male
727.2
GTEX-ZXES-1526-SM-5NQ95
30-39 years, female
715.4
GTEX-ZLV1-1126-SM-4WWBW
60-69 years, female
700.6
GTEX-ZYWO-1526-SM-5SIAL
40-49 years, female
696.9
GTEX-WQUQ-2426-SM-4MVNW
60-69 years, male
687.3
GTEX-14DAR-1426-SM-5RQIR
50-59 years, male
684.3
GTEX-145LT-1026-SM-5LU9O
40-49 years, male
666.8
GTEX-1399R-2026-SM-5K7WN
30-39 years, male
652.3
GTEX-133LE-1426-SM-5IFH1
20-29 years, female
637.4
GTEX-Y5LM-1626-SM-4VDTB
40-49 years, female
635.2
GTEX-ZYFG-2026-SM-5E43Y
60-69 years, female
634.1
GTEX-131XG-1726-SM-5LZUR
50-59 years, female
614.5
GTEX-13PL7-2626-SM-5IFH4
60-69 years, female
607.3
GTEX-ZVZP-1826-SM-5GZXB
50-59 years, male
600.8
GTEX-WFG8-1626-SM-4LVMB
20-29 years, male
596.7
GTEX-11DXX-1626-SM-5H11H
60-69 years, female
587.2
GTEX-ZTSS-0926-SM-59865
40-49 years, male
583.7
GTEX-XBED-1426-SM-4AT4G
60-69 years, male
581.1
GTEX-ZPCL-1726-SM-57WEO
60-69 years, female
578.5
GTEX-13D11-0726-SM-5LZZB
50-59 years, female
570.8
GTEX-131XF-1326-SM-5GCMQ
60-69 years, male
562.4
GTEX-ZEX8-1826-SM-57WBH
50-59 years, male
546.0
GTEX-XUZC-1426-SM-4BRV3
30-39 years, female
542.1
GTEX-ZVT2-2126-SM-5NQ93
50-59 years, female
539.8
GTEX-Y9LG-1626-SM-5IFHM
30-39 years, male
537.4
GTEX-1122O-1326-SM-5H11F
60-69 years, female
517.9
GTEX-ZA64-1226-SM-5HL7B
20-29 years, male
509.9
GTEX-11DXZ-1326-SM-5H11X
50-59 years, male
501.7
GTEX-ZZ64-0526-SM-5GZXM
20-29 years, male
498.2
GTEX-YEC4-1726-SM-4W21E
40-49 years, male
486.9
GTEX-ZVP2-1726-SM-5GU5P
50-59 years, male
486.8
GTEX-11P82-0826-SM-5P9GU
20-29 years, male
464.4
GTEX-13113-1226-SM-5EGHT
60-69 years, female
462.7
GTEX-11P7K-1626-SM-5GU63
30-39 years, male
450.8
GTEX-11NSD-1726-SM-5N9C3
20-29 years, male
449.0
GTEX-ZTPG-2626-SM-57WFX
20-29 years, female
425.0
GTEX-13RTK-0826-SM-5Q5C6
20-29 years, male
416.3
GTEX-VJYA-0926-SM-4KL1N
60-69 years, male
414.2
GTEX-11I78-1126-SM-5A5K5
50-59 years, female
406.2
GTEX-14E6E-1626-SM-5RQI7
30-39 years, male
405.9
GTEX-1399S-2026-SM-5KM4B
30-39 years, female
382.7
GTEX-YF7O-1826-SM-5IFIU
50-59 years, male
378.3
GTEX-X5EB-1626-SM-4E3IV
40-49 years, male
370.0
GTEX-139T6-1026-SM-5IJGC
50-59 years, male
369.6
GTEX-XAJ8-0526-SM-47JYK
40-49 years, male
364.5
GTEX-1399U-2126-SM-5IFEZ
50-59 years, female
364.0
GTEX-WFJO-0926-SM-4LVM2
30-39 years, male
353.0
GTEX-13CF3-1226-SM-5LZXN
60-69 years, female
352.6
GTEX-XXEK-1026-SM-4BRUW
50-59 years, male
346.7
GTEX-WH7G-1626-SM-4LVMY
40-49 years, male
328.6
GTEX-ZLFU-1526-SM-4WWBT
40-49 years, male
312.9
GTEX-11XUK-1426-SM-5EQMG
40-49 years, female
303.4
GTEX-Y3IK-1726-SM-4YCCR
50-59 years, female
296.1
GTEX-ZP4G-1626-SM-57WGD
20-29 years, female
277.1
GTEX-12BJ1-1926-SM-5HL9Z
60-69 years, male
272.9
GTEX-WRHK-1026-SM-4MVOD
20-29 years, female
269.1
GTEX-13O61-1326-SM-5KM31
60-69 years, male
265.1
GTEX-WFG7-1726-SM-4LVME
20-29 years, male
256.9
GTEX-Z9EW-0926-SM-5CVMM
40-49 years, male
252.6
GTEX-ZPIC-2326-SM-57WDW
40-49 years, female
249.4
GTEX-13FH7-1226-SM-5IJFK
50-59 years, female
231.3
GTEX-11VI4-1626-SM-5EQKO
40-49 years, female
225.4
GTEX-Y114-1426-SM-4TT6W
50-59 years, female
213.4
GTEX-X15G-1426-SM-4PQZK
50-59 years, female
196.7
GTEX-13O21-1026-SM-5IJDU
50-59 years, male
153.7
GTEX-13QBU-1926-SM-5IJEW
40-49 years, female
134.8
GTEX-12WSK-1526-SM-5CVNO
40-49 years, female
117.3
GTEX-ZQG8-2526-SM-57WEQ
60-69 years, female
92.9
GTEX-145ME-0926-SM-5O9AR
40-49 years, female
87.7
GTEX-VUSG-1726-SM-4KKZL
50-59 years, male
77.4
GTEX-148VJ-2226-SM-5NQ9M
70-79 years, male
73.5
GTEX-13OVI-1926-SM-5IJCG
60-69 years, female
62.6
GTEX-13111-1426-SM-5DUW3
50-59 years, male
53.8
GTEX-WEY5-1526-SM-4LMJF
40-49 years, female
40.3
GTEX-ZQUD-0926-SM-57WE3
30-39 years, male
36.0
GTEX-ZF2S-1726-SM-57WFT
50-59 years, female
33.5
GTEX-111CU-1326-SM-5NQ8L
50-59 years, male
32.7
GTEX-XMK1-1826-SM-4B66F
40-49 years, male
27.2
GTEX-UPK5-2026-SM-4JBIM
40-49 years, male
25.6
GTEX-117YX-0326-SM-5GICL
50-59 years, male
18.3
GTEX-1192X-2526-SM-59868
50-59 years, male
12.6
GTEX-ZC5H-2326-SM-4WAYT
40-49 years, female
9.2
Show all
SMALL INTESTINE - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.