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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 1673.1
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 985.6
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 836
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 1272.7
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 1235.3
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 1115.3
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 1024.5
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 1475.7
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 392.6
Min RPKM: 18.5
Std RPKM: 70.6
Median RPKM: 163.4
GTEX-R53T-0326-SM-48FEC
50-59 years, female
392.6
GTEX-131XE-0326-SM-5LZVO
50-59 years, male
359.9
GTEX-P78B-1326-SM-3P611
40-49 years, female
348.5
GTEX-Q734-0326-SM-48U15
40-49 years, female
345.0
GTEX-1399R-1226-SM-5P9GF
30-39 years, male
343.9
GTEX-ZF2S-3026-SM-4WWCH
50-59 years, female
286.8
GTEX-13FLV-0326-SM-5N9DJ
50-59 years, male
283.4
GTEX-14E1K-0326-SM-5S2PE
50-59 years, male
281.8
GTEX-QESD-2026-SM-447BI
20-29 years, male
280.4
GTEX-PX3G-0826-SM-48TZS
20-29 years, female
275.1
GTEX-13SLX-1226-SM-5S2Q6
50-59 years, female
271.3
GTEX-UTHO-2426-SM-4JBHD
60-69 years, male
266.9
GTEX-ZAB5-0426-SM-5CVMI
50-59 years, male
263.3
GTEX-11DXZ-0126-SM-5EGGY
50-59 years, male
262.9
GTEX-146FH-1526-SM-5NQBU
50-59 years, female
256.4
GTEX-1212Z-0226-SM-59HLF
60-69 years, male
254.5
GTEX-X3Y1-2726-SM-4PQZH
40-49 years, male
246.5
GTEX-QV44-0326-SM-4R1KD
50-59 years, male
244.9
GTEX-12KS4-1326-SM-5LUB3
30-39 years, male
240.4
GTEX-145MF-0826-SM-5QGQA
50-59 years, male
238.3
GTEX-UPK5-1426-SM-4JBHH
40-49 years, male
235.4
GTEX-147JS-1126-SM-5RQIW
60-69 years, male
234.9
GTEX-QEL4-1226-SM-447A4
50-59 years, male
230.0
GTEX-13NZ9-1326-SM-5MR3V
50-59 years, male
227.7
GTEX-139YR-0226-SM-5IFEM
50-59 years, male
224.1
GTEX-14DAQ-1726-SM-5S2R2
60-69 years, female
220.6
GTEX-XOTO-0826-SM-4B65O
50-59 years, male
218.1
GTEX-132NY-0926-SM-5P9G3
60-69 years, male
216.2
GTEX-WYVS-1926-SM-4PQZ2
40-49 years, female
213.6
GTEX-YB5E-0326-SM-5IFHU
40-49 years, male
213.3
GTEX-T6MN-1226-SM-3NMA5
50-59 years, male
213.1
GTEX-UPIC-0926-SM-4IHLV
20-29 years, female
212.7
GTEX-Z9EW-0426-SM-5CVM9
40-49 years, male
210.7
GTEX-11EQ9-0526-SM-5A5JZ
30-39 years, male
210.1
GTEX-WQUQ-1926-SM-4OOSA
60-69 years, male
208.4
GTEX-ZF29-2026-SM-4WWB7
60-69 years, female
206.8
GTEX-OOBJ-0826-SM-3NB2K
60-69 years, male
201.2
GTEX-14753-1626-SM-5NQ9L
60-69 years, male
197.7
GTEX-13PVR-0126-SM-5S2PY
60-69 years, female
196.9
GTEX-RU72-1426-SM-46MUF
50-59 years, female
196.9
GTEX-13OW6-2626-SM-5IFF2
50-59 years, male
196.3
GTEX-14AS3-0126-SM-5Q5F4
40-49 years, female
196.1
GTEX-U3ZN-0226-SM-3DB8D
30-39 years, female
195.9
GTEX-TKQ2-1726-SM-4DXUP
50-59 years, male
193.8
GTEX-ZPU1-0826-SM-57WG2
40-49 years, male
191.5
GTEX-139TS-1426-SM-5IFJD
60-69 years, male
191.3
GTEX-ZYT6-0626-SM-5E45V
30-39 years, male
190.3
GTEX-1399T-0826-SM-5IFES
60-69 years, male
187.2
GTEX-Y5LM-0426-SM-4VBRO
40-49 years, female
182.0
GTEX-13FTW-1126-SM-5J2NV
40-49 years, male
179.1
GTEX-WFON-1726-SM-4LVMQ
40-49 years, male
175.8
GTEX-Y5V5-0926-SM-4VBPZ
60-69 years, female
175.6
GTEX-11WQC-0726-SM-5EQMR
60-69 years, male
174.2
GTEX-RM2N-1926-SM-48FCU
50-59 years, male
174.0
GTEX-S4Z8-0526-SM-4AD4T
60-69 years, male
173.9
GTEX-VUSG-0126-SM-4KL1X
50-59 years, male
171.8
GTEX-ZZPU-0426-SM-5GZYH
50-59 years, female
170.4
GTEX-QEG4-1826-SM-4R1JN
30-39 years, male
170.1
GTEX-ZYY3-0626-SM-5NQ6W
60-69 years, female
165.4
GTEX-S33H-1626-SM-4AD68
30-39 years, male
163.4
GTEX-139TU-0826-SM-5IJFG
60-69 years, male
161.8
GTEX-12WSD-1426-SM-5GCN9
60-69 years, female
161.7
GTEX-QDVN-0826-SM-48TZ2
50-59 years, male
161.4
GTEX-13QJC-0726-SM-5RQJK
60-69 years, female
157.6
GTEX-YFC4-1526-SM-5IFJS
40-49 years, female
155.3
GTEX-145MO-2326-SM-5NQ9K
60-69 years, male
153.8
GTEX-YEC4-0826-SM-5P9FV
40-49 years, male
153.7
GTEX-S32W-1926-SM-4AD63
50-59 years, female
152.0
GTEX-ZVP2-0626-SM-51MSO
50-59 years, male
151.8
GTEX-13N11-0926-SM-5IJG2
50-59 years, female
149.2
GTEX-ZVT3-1626-SM-5GU66
60-69 years, female
149.1
GTEX-RWSA-1426-SM-47JXA
40-49 years, male
148.1
GTEX-144GM-1326-SM-5LU5E
20-29 years, male
147.9
GTEX-11DXY-0526-SM-5EGGQ
60-69 years, male
147.8
GTEX-11ZVC-0726-SM-5FQT9
50-59 years, female
147.0
GTEX-ZTPG-1426-SM-51MT3
20-29 years, female
146.0
GTEX-12WSM-0726-SM-5GCOW
60-69 years, male
142.7
GTEX-147F4-1426-SM-5LUA8
50-59 years, male
142.1
GTEX-11NV4-1326-SM-5HL6V
60-69 years, male
141.8
GTEX-RN64-1826-SM-48FDV
50-59 years, male
138.6
GTEX-13112-1426-SM-5EGH8
50-59 years, male
135.7
GTEX-13113-1326-SM-5GCOI
60-69 years, female
135.7
GTEX-13VXU-0926-SM-5IFFH
50-59 years, male
135.7
GTEX-11NUK-1226-SM-5P9GM
50-59 years, male
131.0
GTEX-11ZTS-1426-SM-5EQMM
60-69 years, female
130.5
GTEX-12WSL-0226-SM-5CVMJ
50-59 years, male
129.1
GTEX-11GSP-0626-SM-5986T
60-69 years, female
126.7
GTEX-X4EO-1126-SM-4QARQ
60-69 years, female
125.5
GTEX-ZVT4-0626-SM-5E45T
50-59 years, female
125.3
GTEX-SJXC-1226-SM-4DM78
60-69 years, male
123.2
GTEX-1269C-0626-SM-5FQSS
60-69 years, female
121.8
GTEX-13NZB-0626-SM-5IFH6
30-39 years, male
121.2
GTEX-RNOR-1426-SM-48FDJ
50-59 years, female
115.5
GTEX-13FTZ-0726-SM-5IFFY
60-69 years, male
115.0
GTEX-13N2G-0926-SM-5IFGJ
60-69 years, male
114.1
GTEX-131YS-1626-SM-5HL6C
60-69 years, female
113.7
GTEX-YECK-1926-SM-4W21H
60-69 years, male
112.0
GTEX-11OF3-0726-SM-5BC4Z
60-69 years, male
111.7
GTEX-13NYB-1026-SM-5IFH3
40-49 years, male
101.7
GTEX-XBEC-1526-SM-4AT68
50-59 years, male
99.3
GTEX-145LU-1326-SM-5LU9N
50-59 years, male
99.0
GTEX-WZTO-0626-SM-4PQYY
40-49 years, male
98.5
GTEX-RTLS-1326-SM-46MUN
60-69 years, female
97.1
GTEX-14A5I-1726-SM-5QGQ5
50-59 years, female
96.4
GTEX-X261-1726-SM-4PQYT
50-59 years, male
94.5
GTEX-131XH-0626-SM-5LZWH
50-59 years, male
92.9
GTEX-12696-0826-SM-5EGGE
60-69 years, male
89.7
GTEX-X4XY-1626-SM-46MVN
60-69 years, male
88.0
GTEX-X4EP-1026-SM-4QAS5
60-69 years, female
86.6
GTEX-12WSI-0226-SM-5GCNA
50-59 years, male
84.3
GTEX-1497J-0726-SM-5Q5D1
60-69 years, male
81.8
GTEX-REY6-1226-SM-48FDR
60-69 years, male
72.9
GTEX-ZAB4-0826-SM-5LU9D
40-49 years, male
71.9
GTEX-11ZUS-2526-SM-59872
30-39 years, male
63.8
GTEX-Q2AG-1126-SM-48U1P
40-49 years, female
63.7
GTEX-13O3O-1826-SM-5IFGW
60-69 years, female
61.5
GTEX-14C38-1526-SM-5RQJ7
50-59 years, male
48.0
GTEX-12WSG-0626-SM-5FQTQ
50-59 years, female
40.8
GTEX-12ZZZ-1326-SM-59HKW
60-69 years, male
18.5
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.