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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 3206.1
Min RPKM: 0.0
Std RPKM: 652.9
Median RPKM: 419.5
GTEX-XGQ4-1326-SM-4GIDU
50-59 years, male
3206.1
GTEX-YB5E-1526-SM-5IFIE
40-49 years, male
2986.0
GTEX-XUZC-1426-SM-4BRV3
30-39 years, female
2304.0
GTEX-ZZ64-0526-SM-5GZXM
20-29 years, male
1976.4
GTEX-ZYFG-2026-SM-5E43Y
60-69 years, female
1750.5
GTEX-133LE-1426-SM-5IFH1
20-29 years, female
1676.9
GTEX-13PL7-2626-SM-5IFH4
60-69 years, female
1670.7
GTEX-131XF-1326-SM-5GCMQ
60-69 years, male
1608.5
GTEX-ZA64-1226-SM-5HL7B
20-29 years, male
1542.6
GTEX-11P82-0826-SM-5P9GU
20-29 years, male
1417.7
GTEX-11P7K-1626-SM-5GU63
30-39 years, male
1314.4
GTEX-ZXES-1526-SM-5NQ95
30-39 years, female
1244.4
GTEX-ZYWO-1526-SM-5SIAL
40-49 years, female
1212.8
GTEX-11EQ9-1326-SM-5985X
30-39 years, male
1128.0
GTEX-145LT-1026-SM-5LU9O
40-49 years, male
1047.6
GTEX-13113-1226-SM-5EGHT
60-69 years, female
1023.2
GTEX-11DXX-1626-SM-5H11H
60-69 years, female
1000.3
GTEX-XBED-1426-SM-4AT4G
60-69 years, male
994.9
GTEX-14DAR-1426-SM-5RQIR
50-59 years, male
975.2
GTEX-X5EB-1626-SM-4E3IV
40-49 years, male
966.5
GTEX-WQUQ-2426-SM-4MVNW
60-69 years, male
965.8
GTEX-Y9LG-1626-SM-5IFHM
30-39 years, male
933.8
GTEX-11DXZ-1326-SM-5H11X
50-59 years, male
855.6
GTEX-YF7O-1826-SM-5IFIU
50-59 years, male
839.9
GTEX-1122O-1326-SM-5H11F
60-69 years, female
783.1
GTEX-12BJ1-1926-SM-5HL9Z
60-69 years, male
742.5
GTEX-ZTSS-0926-SM-59865
40-49 years, male
731.0
GTEX-ZVZP-1826-SM-5GZXB
50-59 years, male
727.5
GTEX-Y3IK-1726-SM-4YCCR
50-59 years, female
719.0
GTEX-ZLV1-1126-SM-4WWBW
60-69 years, female
701.2
GTEX-13FTW-2026-SM-5IJE2
40-49 years, male
668.2
GTEX-ZEX8-1826-SM-57WBH
50-59 years, male
608.0
GTEX-111YS-1426-SM-5GID8
60-69 years, male
605.5
GTEX-11NSD-1726-SM-5N9C3
20-29 years, male
550.2
GTEX-ZPCL-1726-SM-57WEO
60-69 years, female
535.7
GTEX-13D11-0726-SM-5LZZB
50-59 years, female
530.1
GTEX-ZTX8-0526-SM-59HLD
20-29 years, male
526.1
GTEX-1399R-2026-SM-5K7WN
30-39 years, male
508.3
GTEX-WFJO-0926-SM-4LVM2
30-39 years, male
504.7
GTEX-11I78-1126-SM-5A5K5
50-59 years, female
493.1
GTEX-YEC4-1726-SM-4W21E
40-49 years, male
478.7
GTEX-ZTPG-2626-SM-57WFX
20-29 years, female
468.5
GTEX-XAJ8-0526-SM-47JYK
40-49 years, male
466.8
GTEX-139YR-2226-SM-5IFFW
50-59 years, male
440.1
GTEX-11VI4-1626-SM-5EQKO
40-49 years, female
399.0
GTEX-14E6E-1626-SM-5RQI7
30-39 years, male
360.2
GTEX-13O61-1326-SM-5KM31
60-69 years, male
359.0
GTEX-13RTK-0826-SM-5Q5C6
20-29 years, male
353.8
GTEX-XXEK-1026-SM-4BRUW
50-59 years, male
329.9
GTEX-WH7G-1626-SM-4LVMY
40-49 years, male
240.6
GTEX-Y114-1426-SM-4TT6W
50-59 years, female
234.0
GTEX-WFG7-1726-SM-4LVME
20-29 years, male
202.7
GTEX-139T6-1026-SM-5IJGC
50-59 years, male
197.0
GTEX-13FH7-1226-SM-5IJFK
50-59 years, female
187.0
GTEX-11XUK-1426-SM-5EQMG
40-49 years, female
186.5
GTEX-ZVT2-2126-SM-5NQ93
50-59 years, female
161.1
GTEX-X15G-1426-SM-4PQZK
50-59 years, female
154.2
GTEX-13O21-1026-SM-5IJDU
50-59 years, male
150.9
GTEX-1399S-2026-SM-5KM4B
30-39 years, female
146.9
GTEX-13CF3-1226-SM-5LZXN
60-69 years, female
138.0
GTEX-Z9EW-0926-SM-5CVMM
40-49 years, male
137.0
GTEX-1399U-2126-SM-5IFEZ
50-59 years, female
127.3
GTEX-ZPIC-2326-SM-57WDW
40-49 years, female
120.4
GTEX-ZLFU-1526-SM-4WWBT
40-49 years, male
113.0
GTEX-12WSK-1526-SM-5CVNO
40-49 years, female
96.4
GTEX-111CU-1326-SM-5NQ8L
50-59 years, male
71.5
GTEX-WRHK-1026-SM-4MVOD
20-29 years, female
63.4
GTEX-ZP4G-1626-SM-57WGD
20-29 years, female
60.6
GTEX-13OVI-1926-SM-5IJCG
60-69 years, female
46.5
GTEX-1192X-2526-SM-59868
50-59 years, male
46.3
GTEX-ZVP2-1726-SM-5GU5P
50-59 years, male
44.2
GTEX-ZF2S-1726-SM-57WFT
50-59 years, female
42.4
GTEX-145ME-0926-SM-5O9AR
40-49 years, female
39.4
GTEX-13QBU-1926-SM-5IJEW
40-49 years, female
37.5
GTEX-148VJ-2226-SM-5NQ9M
70-79 years, male
37.2
GTEX-VUSG-1726-SM-4KKZL
50-59 years, male
33.2
GTEX-WFG8-1626-SM-4LVMB
20-29 years, male
31.5
GTEX-ZQUD-0926-SM-57WE3
30-39 years, male
20.9
GTEX-Y5LM-1626-SM-4VDTB
40-49 years, female
19.5
GTEX-13111-1426-SM-5DUW3
50-59 years, male
18.7
GTEX-ZQG8-2526-SM-57WEQ
60-69 years, female
18.4
GTEX-117YX-0326-SM-5GICL
50-59 years, male
11.0
GTEX-XMK1-1826-SM-4B66F
40-49 years, male
10.9
GTEX-WEY5-1526-SM-4LMJF
40-49 years, female
4.3
GTEX-131XG-1726-SM-5LZUR
50-59 years, female
3.8
GTEX-ZC5H-2326-SM-4WAYT
40-49 years, female
2.0
GTEX-UPK5-2026-SM-4JBIM
40-49 years, male
1.4
GTEX-VJYA-0926-SM-4KL1N
60-69 years, male
0.0
Show all
SMALL INTESTINE - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.