We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 877.9
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 164.5
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 175.6
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 700
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 527.2
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 1284.9
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 595.9
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 732.4
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 2124.5
Min RPKM: 46.4
Std RPKM: 349.4
Median RPKM: 377.5
GTEX-QESD-2026-SM-447BI
20-29 years, male
2124.5
GTEX-ZYT6-0626-SM-5E45V
30-39 years, male
1452.6
GTEX-13OW6-2626-SM-5IFF2
50-59 years, male
1254.6
GTEX-QEG4-1826-SM-4R1JN
30-39 years, male
1251.2
GTEX-T6MN-1226-SM-3NMA5
50-59 years, male
1226.9
GTEX-13SLX-1226-SM-5S2Q6
50-59 years, female
1182.5
GTEX-145MF-0826-SM-5QGQA
50-59 years, male
1132.4
GTEX-11NV4-1326-SM-5HL6V
60-69 years, male
1022.7
GTEX-XOTO-0826-SM-4B65O
50-59 years, male
994.2
GTEX-RN64-1826-SM-48FDV
50-59 years, male
984.0
GTEX-SJXC-1226-SM-4DM78
60-69 years, male
984.0
GTEX-131XH-0626-SM-5LZWH
50-59 years, male
976.6
GTEX-13FLV-0326-SM-5N9DJ
50-59 years, male
962.5
GTEX-11ZUS-2526-SM-59872
30-39 years, male
958.0
GTEX-11DXY-0526-SM-5EGGQ
60-69 years, male
957.4
GTEX-11NUK-1226-SM-5P9GM
50-59 years, male
942.6
GTEX-1212Z-0226-SM-59HLF
60-69 years, male
924.6
GTEX-13112-1426-SM-5EGH8
50-59 years, male
895.7
GTEX-WZTO-0626-SM-4PQYY
40-49 years, male
885.8
GTEX-14753-1626-SM-5NQ9L
60-69 years, male
828.5
GTEX-11GSP-0626-SM-5986T
60-69 years, female
816.7
GTEX-RWSA-1426-SM-47JXA
40-49 years, male
806.6
GTEX-131YS-1626-SM-5HL6C
60-69 years, female
767.0
GTEX-13VXU-0926-SM-5IFFH
50-59 years, male
752.7
GTEX-RNOR-1426-SM-48FDJ
50-59 years, female
744.7
GTEX-13FTZ-0726-SM-5IFFY
60-69 years, male
739.6
GTEX-13NYB-1026-SM-5IFH3
40-49 years, male
721.1
GTEX-YECK-1926-SM-4W21H
60-69 years, male
718.1
GTEX-ZVT4-0626-SM-5E45T
50-59 years, female
697.3
GTEX-14DAQ-1726-SM-5S2R2
60-69 years, female
688.1
GTEX-11DXZ-0126-SM-5EGGY
50-59 years, male
680.3
GTEX-11OF3-0726-SM-5BC4Z
60-69 years, male
671.3
GTEX-147JS-1126-SM-5RQIW
60-69 years, male
669.0
GTEX-PX3G-0826-SM-48TZS
20-29 years, female
631.7
GTEX-147F4-1426-SM-5LUA8
50-59 years, male
618.2
GTEX-12WSM-0726-SM-5GCOW
60-69 years, male
599.6
GTEX-X4EO-1126-SM-4QARQ
60-69 years, female
598.0
GTEX-145LU-1326-SM-5LU9N
50-59 years, male
595.1
GTEX-12WSD-1426-SM-5GCN9
60-69 years, female
593.7
GTEX-ZF2S-3026-SM-4WWCH
50-59 years, female
581.4
GTEX-11ZVC-0726-SM-5FQT9
50-59 years, female
570.4
GTEX-ZVT3-1626-SM-5GU66
60-69 years, female
566.3
GTEX-11WQC-0726-SM-5EQMR
60-69 years, male
557.4
GTEX-139TS-1426-SM-5IFJD
60-69 years, male
557.2
GTEX-139TU-0826-SM-5IJFG
60-69 years, male
524.6
GTEX-11ZTS-1426-SM-5EQMM
60-69 years, female
515.9
GTEX-14AS3-0126-SM-5Q5F4
40-49 years, female
503.0
GTEX-13QJC-0726-SM-5RQJK
60-69 years, female
494.3
GTEX-1399R-1226-SM-5P9GF
30-39 years, male
476.5
GTEX-1399T-0826-SM-5IFES
60-69 years, male
474.7
GTEX-OOBJ-0826-SM-3NB2K
60-69 years, male
470.9
GTEX-P78B-1326-SM-3P611
40-49 years, female
463.5
GTEX-12WSI-0226-SM-5GCNA
50-59 years, male
450.4
GTEX-RTLS-1326-SM-46MUN
60-69 years, female
441.3
GTEX-13N11-0926-SM-5IJG2
50-59 years, female
424.4
GTEX-WYVS-1926-SM-4PQZ2
40-49 years, female
417.7
GTEX-R53T-0326-SM-48FEC
50-59 years, female
415.9
GTEX-Y5V5-0926-SM-4VBPZ
60-69 years, female
414.0
GTEX-YFC4-1526-SM-5IFJS
40-49 years, female
403.8
GTEX-13113-1326-SM-5GCOI
60-69 years, female
377.5
GTEX-14E1K-0326-SM-5S2PE
50-59 years, male
367.8
GTEX-Q2AG-1126-SM-48U1P
40-49 years, female
365.5
GTEX-QV44-0326-SM-4R1KD
50-59 years, male
364.0
GTEX-XBEC-1526-SM-4AT68
50-59 years, male
354.3
GTEX-13FTW-1126-SM-5J2NV
40-49 years, male
354.0
GTEX-UPIC-0926-SM-4IHLV
20-29 years, female
353.6
GTEX-13O3O-1826-SM-5IFGW
60-69 years, female
335.2
GTEX-12KS4-1326-SM-5LUB3
30-39 years, male
328.3
GTEX-RU72-1426-SM-46MUF
50-59 years, female
326.3
GTEX-X4EP-1026-SM-4QAS5
60-69 years, female
325.7
GTEX-WFON-1726-SM-4LVMQ
40-49 years, male
322.3
GTEX-X3Y1-2726-SM-4PQZH
40-49 years, male
312.3
GTEX-14A5I-1726-SM-5QGQ5
50-59 years, female
310.2
GTEX-145MO-2326-SM-5NQ9K
60-69 years, male
305.5
GTEX-ZAB5-0426-SM-5CVMI
50-59 years, male
305.4
GTEX-12ZZZ-1326-SM-59HKW
60-69 years, male
303.5
GTEX-RM2N-1926-SM-48FCU
50-59 years, male
302.0
GTEX-12696-0826-SM-5EGGE
60-69 years, male
299.6
GTEX-1269C-0626-SM-5FQSS
60-69 years, female
286.2
GTEX-ZZPU-0426-SM-5GZYH
50-59 years, female
284.2
GTEX-UTHO-2426-SM-4JBHD
60-69 years, male
279.8
GTEX-1497J-0726-SM-5Q5D1
60-69 years, male
277.3
GTEX-UPK5-1426-SM-4JBHH
40-49 years, male
264.5
GTEX-Y5LM-0426-SM-4VBRO
40-49 years, female
259.4
GTEX-ZVP2-0626-SM-51MSO
50-59 years, male
256.2
GTEX-132NY-0926-SM-5P9G3
60-69 years, male
255.9
GTEX-X261-1726-SM-4PQYT
50-59 years, male
251.4
GTEX-REY6-1226-SM-48FDR
60-69 years, male
233.4
GTEX-ZF29-2026-SM-4WWB7
60-69 years, female
231.4
GTEX-YB5E-0326-SM-5IFHU
40-49 years, male
230.6
GTEX-S4Z8-0526-SM-4AD4T
60-69 years, male
228.1
GTEX-11EQ9-0526-SM-5A5JZ
30-39 years, male
215.2
GTEX-ZAB4-0826-SM-5LU9D
40-49 years, male
202.6
GTEX-13NZB-0626-SM-5IFH6
30-39 years, male
200.5
GTEX-13PVR-0126-SM-5S2PY
60-69 years, female
195.1
GTEX-12WSG-0626-SM-5FQTQ
50-59 years, female
194.2
GTEX-WQUQ-1926-SM-4OOSA
60-69 years, male
190.6
GTEX-QEL4-1226-SM-447A4
50-59 years, male
187.3
GTEX-13N2G-0926-SM-5IFGJ
60-69 years, male
185.8
GTEX-Q734-0326-SM-48U15
40-49 years, female
182.6
GTEX-YEC4-0826-SM-5P9FV
40-49 years, male
168.0
GTEX-TKQ2-1726-SM-4DXUP
50-59 years, male
164.4
GTEX-Z9EW-0426-SM-5CVM9
40-49 years, male
163.0
GTEX-ZYY3-0626-SM-5NQ6W
60-69 years, female
159.2
GTEX-ZPU1-0826-SM-57WG2
40-49 years, male
157.5
GTEX-VUSG-0126-SM-4KL1X
50-59 years, male
139.2
GTEX-13NZ9-1326-SM-5MR3V
50-59 years, male
132.2
GTEX-139YR-0226-SM-5IFEM
50-59 years, male
127.9
GTEX-U3ZN-0226-SM-3DB8D
30-39 years, female
125.2
GTEX-S32W-1926-SM-4AD63
50-59 years, female
119.8
GTEX-S33H-1626-SM-4AD68
30-39 years, male
116.2
GTEX-ZTPG-1426-SM-51MT3
20-29 years, female
113.1
GTEX-14C38-1526-SM-5RQJ7
50-59 years, male
98.9
GTEX-146FH-1526-SM-5NQBU
50-59 years, female
88.9
GTEX-131XE-0326-SM-5LZVO
50-59 years, male
87.0
GTEX-12WSL-0226-SM-5CVMJ
50-59 years, male
70.1
GTEX-144GM-1326-SM-5LU5E
20-29 years, male
66.4
GTEX-QDVN-0826-SM-48TZ2
50-59 years, male
57.9
GTEX-X4XY-1626-SM-46MVN
60-69 years, male
46.4
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.