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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Cells in seminiferous ducts: 65 Other cell types: 35
Male, age 34
Sample 2 TPM: 82.4
Cell types%
Cells in seminiferous ducts: 75 Other cell types: 25
Male, age 62
Sample 3 TPM: 94
Cell types%
Cells in seminiferous ducts: 70 Other cell types: 30
Male, age 34
Sample 4 TPM: 58.5
Cell types%
Cells in seminiferous ducts: 60 Other cell types: 40
Male, age 26
Sample 5 TPM: 75.3
Cell types%
Cells in seminiferous ducts: 55 Other cell types: 45
Male, age 50
Sample 6 TPM: 86.1
Cell types%
Cells in seminiferous ducts: 85 Other cell types: 15
Male, age 37
Sample 7 TPM: 69.3
Cell types%
Cells in seminiferous ducts: 35 Other cell types: 65
Male, age 51
Sample 8 TPM: 15.1
Cell types%
Cells in seminiferous ducts: 65 Other cell types: 35
Male, age 34
Sample 9 TPM: 36.4
Cell types%
Cells in seminiferous ducts: 70 Other cell types: 30
Male, age 26
Sample 10 TPM: 19.5
Cell types%
Cells in seminiferous ducts: 75 Other cell types: 25
TESTIS - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 67.8
Min RPKM: 27.8
Std RPKM: 8.4
Median RPKM: 47.8
GTEX-11NV4-1726-SM-5N9FC
60-69 years, male
67.8
GTEX-XQ3S-2726-SM-4BOP2
20-29 years, male
67.8
GTEX-13VXU-0726-SM-5J2O7
50-59 years, male
63.4
GTEX-OOBK-2126-SM-3LK5T
40-49 years, male
62.7
GTEX-14ABY-0626-SM-5Q5C9
50-59 years, male
62.6
GTEX-12WSL-2326-SM-5DUXQ
50-59 years, male
61.9
GTEX-T6MN-2026-SM-4DM7L
50-59 years, male
61.7
GTEX-S95S-1126-SM-4B64E
60-69 years, male
61.6
GTEX-WZTO-0326-SM-4PQYZ
40-49 years, male
61.4
GTEX-11LCK-2326-SM-5HL53
30-39 years, male
61.3
GTEX-N7MS-0126-SM-3TW8O
60-69 years, male
60.9
GTEX-111VG-1926-SM-5GIDO
60-69 years, male
60.8
GTEX-WK11-0326-SM-4OOS6
50-59 years, male
60.8
GTEX-S7PM-0626-SM-4AD4Q
60-69 years, male
60.7
GTEX-X5EB-2026-SM-4E3KA
40-49 years, male
60.7
GTEX-WH7G-1926-SM-4LVMM
40-49 years, male
60.4
GTEX-11ZUS-2726-SM-5FQUA
30-39 years, male
59.9
GTEX-R55E-0726-SM-48FCZ
20-29 years, male
59.7
GTEX-Z93S-1726-SM-5HL8G
50-59 years, male
58.9
GTEX-11WQC-2326-SM-5EQKE
60-69 years, male
58.4
GTEX-UPJH-0126-SM-4IHLL
50-59 years, male
57.9
GTEX-PW2O-1426-SM-48TCD
20-29 years, male
57.8
GTEX-REY6-0126-SM-48FDT
60-69 years, male
57.1
GTEX-13O1R-0726-SM-5IJEI
60-69 years, male
56.9
GTEX-11TUW-2226-SM-5EQL9
60-69 years, male
56.8
GTEX-T8EM-0126-SM-4DM5R
40-49 years, male
56.5
GTEX-Y111-2426-SM-4TT23
50-59 years, male
56.3
GTEX-QEG4-0126-SM-48TZE
30-39 years, male
55.5
GTEX-117YW-1526-SM-5EGGP
50-59 years, male
55.4
GTEX-12696-0226-SM-5EGL3
60-69 years, male
55.4
GTEX-X261-2326-SM-4PQYU
50-59 years, male
55.4
GTEX-11NUK-2626-SM-5A5MB
50-59 years, male
55.3
GTEX-XAJ8-1326-SM-47JYT
40-49 years, male
54.8
GTEX-13NZA-2526-SM-5IJFX
60-69 years, male
54.7
GTEX-139TS-1726-SM-5IJG5
60-69 years, male
54.6
GTEX-X3Y1-2626-SM-4PQZI
40-49 years, male
54.6
GTEX-S7SE-0326-SM-4AT5Q
50-59 years, male
54.5
GTEX-13N2G-0126-SM-5N9DV
60-69 years, male
54.3
GTEX-11EQ8-1426-SM-5EGJR
60-69 years, male
54.1
GTEX-11OF3-1826-SM-5987N
60-69 years, male
54.0
GTEX-WVLH-2626-SM-4MVNV
50-59 years, male
54.0
GTEX-U8T8-1126-SM-4DXUE
60-69 years, male
53.9
GTEX-XBEC-0126-SM-4GIDT
50-59 years, male
53.7
GTEX-111FC-1926-SM-5GZYC
60-69 years, male
53.6
GTEX-144GM-0426-SM-5Q5C8
20-29 years, male
53.5
GTEX-P4QS-2126-SM-3NMCF
60-69 years, male
53.5
GTEX-SNMC-1026-SM-4DM7K
20-29 years, male
53.4
GTEX-QV31-1126-SM-4R1K4
30-39 years, male
53.3
GTEX-13112-0226-SM-5P9IV
50-59 years, male
53.1
GTEX-V1D1-2126-SM-4JBH4
50-59 years, male
53.1
GTEX-11NSD-1026-SM-5N9BE
20-29 years, male
53.0
GTEX-145MO-0126-SM-5S2QU
60-69 years, male
53.0
GTEX-RN64-2326-SM-48FDW
50-59 years, male
53.0
GTEX-13FHP-2826-SM-5IJFW
50-59 years, male
52.7
GTEX-OOBJ-2126-SM-3NB1N
60-69 years, male
52.7
GTEX-QLQW-1026-SM-447A9
30-39 years, male
52.7
GTEX-XLM4-1526-SM-4AT6D
60-69 years, male
52.4
GTEX-YJ89-0626-SM-4TT3Z
60-69 years, male
52.4
GTEX-U8XE-0126-SM-4E3I3
30-39 years, male
52.3
GTEX-T5JC-0726-SM-4DM55
20-29 years, male
51.9
GTEX-13OVH-0726-SM-5N9BU
70-79 years, male
51.8
GTEX-144GN-1626-SM-5Q5BU
50-59 years, male
51.5
GTEX-12WSH-0326-SM-5GCNH
50-59 years, male
51.4
GTEX-11GS4-2026-SM-5N9CP
60-69 years, male
51.3
GTEX-13NZB-2026-SM-5MR4M
30-39 years, male
51.2
GTEX-14753-0626-SM-5Q5CY
60-69 years, male
51.1
GTEX-13N1W-2626-SM-5IJEP
70-79 years, male
50.5
GTEX-13OVL-0426-SM-5IFG6
50-59 years, male
50.4
GTEX-145MH-2326-SM-5O9AW
50-59 years, male
50.3
GTEX-TKQ1-0926-SM-4DXU2
30-39 years, male
50.3
GTEX-12ZZY-0126-SM-5LZV2
60-69 years, male
50.2
GTEX-Y5V6-1726-SM-4VDSZ
60-69 years, male
50.0
GTEX-11O72-0726-SM-5P9GO
40-49 years, male
49.8
GTEX-ZA64-1626-SM-5CVME
20-29 years, male
49.7
GTEX-12WSI-2126-SM-5GCMV
50-59 years, male
49.6
GTEX-ZT9X-1426-SM-5DUX1
40-49 years, male
49.5
GTEX-WOFM-1126-SM-4OOSB
20-29 years, male
49.4
GTEX-ZYT6-2726-SM-5GICP
30-39 years, male
49.2
GTEX-144GL-0726-SM-5LU4P
50-59 years, male
48.6
GTEX-RM2N-1326-SM-48FCW
50-59 years, male
48.5
GTEX-ZAB5-2426-SM-5CVMW
50-59 years, male
48.4
GTEX-147JS-0126-SM-5S2TW
60-69 years, male
48.2
GTEX-Q2AI-1226-SM-48U14
40-49 years, male
48.0
GTEX-SUCS-1326-SM-4DM5T
70-79 years, male
48.0
GTEX-U3ZM-1626-SM-4DXSK
40-49 years, male
47.9
GTEX-117XS-2026-SM-5GID1
60-69 years, male
47.8
GTEX-131XE-0426-SM-5IJF4
50-59 years, male
47.8
GTEX-13NYB-2226-SM-5MR58
40-49 years, male
47.8
GTEX-V955-1926-SM-4KL1L
60-69 years, male
47.7
GTEX-13O21-1226-SM-5J2MK
50-59 years, male
47.3
GTEX-YF7O-2026-SM-4W1YE
50-59 years, male
47.3
GTEX-Q2AH-1526-SM-48TZG
40-49 years, male
47.0
GTEX-11EI6-2226-SM-5EGJM
60-69 years, male
46.8
GTEX-XGQ4-2026-SM-4AT6G
50-59 years, male
46.8
GTEX-YEC3-1726-SM-5IFIK
50-59 years, male
46.8
GTEX-OIZH-2126-SM-3NB1P
50-59 years, male
46.6
GTEX-QMRM-1526-SM-4R1K6
50-59 years, male
46.6
GTEX-RUSQ-2126-SM-47JXK
50-59 years, male
46.6
GTEX-XPT6-1626-SM-4B655
20-29 years, male
46.5
GTEX-ZDYS-1326-SM-5IJFF
50-59 years, male
46.4
GTEX-RWSA-2426-SM-47JXR
40-49 years, male
46.2
GTEX-OHPM-2126-SM-3LK75
50-59 years, male
46.1
GTEX-ZV7C-2026-SM-5NQ8F
50-59 years, male
46.0
GTEX-R55D-0126-SM-48FEL
50-59 years, male
45.9
GTEX-ZYFC-0126-SM-5GIEH
50-59 years, male
45.8
GTEX-ZTSS-1526-SM-51MTC
40-49 years, male
45.7
GTEX-YEC4-1526-SM-4W1YU
40-49 years, male
45.4
GTEX-SNOS-1126-SM-4DM67
40-49 years, male
45.3
GTEX-13FLW-2126-SM-5N9FD
50-59 years, male
45.2
GTEX-NFK9-0126-SM-3LK5H
40-49 years, male
45.0
GTEX-QEG5-0126-SM-4R1JR
20-29 years, male
45.0
GTEX-1212Z-0326-SM-5FQSJ
60-69 years, male
44.9
GTEX-13111-1526-SM-5EGJX
50-59 years, male
44.9
GTEX-U3ZH-1526-SM-4DXV1
30-39 years, male
44.9
GTEX-ZVTK-0126-SM-57WDG
20-29 years, male
44.8
GTEX-13OW5-2526-SM-5L3I1
60-69 years, male
44.6
GTEX-ZQUD-2026-SM-51MSM
30-39 years, male
44.5
GTEX-XBED-2026-SM-4AT5D
60-69 years, male
44.2
GTEX-S3XE-1526-SM-4AD5A
50-59 years, male
43.9
GTEX-11DXZ-2126-SM-59881
50-59 years, male
43.8
GTEX-139TT-2226-SM-5LZWO
60-69 years, male
43.7
GTEX-111CU-1726-SM-5EGHM
50-59 years, male
43.5
GTEX-ZT9W-2226-SM-57WFU
50-59 years, male
43.4
GTEX-132QS-1226-SM-5P9GD
60-69 years, male
43.1
GTEX-R55C-1426-SM-48FED
40-49 years, male
43.0
GTEX-TKQ2-1526-SM-4DXUN
50-59 years, male
43.0
GTEX-S33H-0126-SM-4AD62
30-39 years, male
42.3
GTEX-VJYA-1426-SM-4KL1Y
60-69 years, male
42.3
GTEX-11EQ9-1926-SM-5PNVV
30-39 years, male
42.2
GTEX-XPVG-2226-SM-4B65U
50-59 years, male
42.2
GTEX-11ONC-2226-SM-5HL6D
60-69 years, male
41.8
GTEX-OXRL-2126-SM-3NM98
50-59 years, male
41.7
GTEX-ZUA1-2726-SM-59HLJ
40-49 years, male
41.7
GTEX-ZVZP-2226-SM-57WBF
50-59 years, male
41.6
GTEX-12WSM-1326-SM-5GCP9
60-69 years, male
41.0
GTEX-WFG8-1926-SM-4LVM1
20-29 years, male
40.7
GTEX-XMK1-2026-SM-4B65K
40-49 years, male
40.7
GTEX-147F4-0626-SM-5LUAK
50-59 years, male
40.2
GTEX-O5YT-2126-SM-3MJGD
20-29 years, male
40.2
GTEX-13O61-2026-SM-5J2M6
60-69 years, male
40.1
GTEX-ZZ64-1126-SM-5GZXY
20-29 years, male
39.7
GTEX-13OW6-0126-SM-5IJGM
50-59 years, male
39.5
GTEX-14A6H-2326-SM-5Q5B5
30-39 years, male
39.5
GTEX-139T6-1226-SM-5IFFC
50-59 years, male
39.2
GTEX-WHSB-2126-SM-4M1XF
50-59 years, male
39.2
GTEX-QV44-1726-SM-4R1KG
50-59 years, male
38.3
GTEX-S4Q7-1226-SM-4AD5I
20-29 years, male
38.1
GTEX-QLQ7-1426-SM-4R1JX
60-69 years, male
38.0
GTEX-U4B1-1526-SM-4DXSL
40-49 years, male
38.0
GTEX-12C56-1426-SM-5FQSW
20-29 years, male
37.8
GTEX-P4QR-0226-SM-3NMCH
60-69 years, male
37.2
GTEX-Y8E4-2226-SM-5LU94
40-49 years, male
37.1
GTEX-YB5E-1926-SM-5IFIG
40-49 years, male
36.5
GTEX-1399Q-2826-SM-5IJEZ
40-49 years, male
36.3
GTEX-ZPU1-2126-SM-57WED
40-49 years, male
36.2
GTEX-PLZ5-1526-SM-3P5ZX
50-59 years, male
36.0
GTEX-OIZI-0126-SM-3NB13
40-49 years, male
35.4
GTEX-11P7K-1026-SM-5HL6Y
30-39 years, male
34.5
GTEX-1399R-1626-SM-5P9GG
30-39 years, male
33.7
GTEX-ZAB4-0126-SM-5CVMG
40-49 years, male
33.6
GTEX-111YS-2026-SM-5EGGL
60-69 years, male
33.3
GTEX-145LT-0426-SM-5LUAP
40-49 years, male
32.5
GTEX-1339X-1926-SM-5PNVP
40-49 years, male
32.3
GTEX-Y9LG-1726-SM-4VBQE
30-39 years, male
32.3
GTEX-11TT1-2226-SM-5GU6B
20-29 years, male
32.2
GTEX-YFCO-1726-SM-4W21S
40-49 years, male
32.2
GTEX-WFON-2026-SM-4LVMW
40-49 years, male
32.1
GTEX-11WQK-2826-SM-5EQKH
50-59 years, male
32.0
GTEX-13FTW-1326-SM-5LZZD
40-49 years, male
31.9
GTEX-11P82-1526-SM-5BC5M
20-29 years, male
31.5
GTEX-ZDTT-2026-SM-5K7TY
60-69 years, male
29.8
GTEX-ZTX8-1126-SM-51MRM
20-29 years, male
27.8
Show all
TESTIS - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.