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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 76.9
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 4.9
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 4.6
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 17.7
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 18.7
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 55.2
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 27.7
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 77.6
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 527.4
Min RPKM: 54.4
Std RPKM: 79.6
Median RPKM: 137.1
GTEX-REY6-1226-SM-48FDR
60-69 years, male
527.4
GTEX-1497J-0726-SM-5Q5D1
60-69 years, male
509.9
GTEX-RTLS-1326-SM-46MUN
60-69 years, female
354.2
GTEX-12WSG-0626-SM-5FQTQ
50-59 years, female
328.1
GTEX-ZYY3-0626-SM-5NQ6W
60-69 years, female
303.5
GTEX-XBEC-1526-SM-4AT68
50-59 years, male
285.1
GTEX-RU72-1426-SM-46MUF
50-59 years, female
279.1
GTEX-X4XY-1626-SM-46MVN
60-69 years, male
270.2
GTEX-Q2AG-1126-SM-48U1P
40-49 years, female
267.2
GTEX-13O3O-1826-SM-5IFGW
60-69 years, female
252.4
GTEX-11WQC-0726-SM-5EQMR
60-69 years, male
246.9
GTEX-YECK-1926-SM-4W21H
60-69 years, male
241.4
GTEX-1212Z-0226-SM-59HLF
60-69 years, male
241.2
GTEX-139TU-0826-SM-5IJFG
60-69 years, male
239.8
GTEX-12WSM-0726-SM-5GCOW
60-69 years, male
239.7
GTEX-11ZVC-0726-SM-5FQT9
50-59 years, female
236.2
GTEX-PX3G-0826-SM-48TZS
20-29 years, female
233.5
GTEX-13QJC-0726-SM-5RQJK
60-69 years, female
229.3
GTEX-S33H-1626-SM-4AD68
30-39 years, male
224.6
GTEX-UPIC-0926-SM-4IHLV
20-29 years, female
224.4
GTEX-X4EP-1026-SM-4QAS5
60-69 years, female
220.7
GTEX-13N11-0926-SM-5IJG2
50-59 years, female
217.3
GTEX-ZVT3-1626-SM-5GU66
60-69 years, female
216.6
GTEX-139TS-1426-SM-5IFJD
60-69 years, male
207.2
GTEX-147JS-1126-SM-5RQIW
60-69 years, male
206.9
GTEX-11ZUS-2526-SM-59872
30-39 years, male
205.8
GTEX-13FTZ-0726-SM-5IFFY
60-69 years, male
205.6
GTEX-Y5LM-0426-SM-4VBRO
40-49 years, female
202.1
GTEX-13N2G-0926-SM-5IFGJ
60-69 years, male
200.6
GTEX-13NZ9-1326-SM-5MR3V
50-59 years, male
197.2
GTEX-12KS4-1326-SM-5LUB3
30-39 years, male
196.7
GTEX-S32W-1926-SM-4AD63
50-59 years, female
195.7
GTEX-132NY-0926-SM-5P9G3
60-69 years, male
191.9
GTEX-13113-1326-SM-5GCOI
60-69 years, female
190.8
GTEX-12696-0826-SM-5EGGE
60-69 years, male
189.1
GTEX-1269C-0626-SM-5FQSS
60-69 years, female
186.7
GTEX-X261-1726-SM-4PQYT
50-59 years, male
182.2
GTEX-13SLX-1226-SM-5S2Q6
50-59 years, female
179.9
GTEX-T6MN-1226-SM-3NMA5
50-59 years, male
179.1
GTEX-11NV4-1326-SM-5HL6V
60-69 years, male
176.1
GTEX-11OF3-0726-SM-5BC4Z
60-69 years, male
175.3
GTEX-145LU-1326-SM-5LU9N
50-59 years, male
168.5
GTEX-13NYB-1026-SM-5IFH3
40-49 years, male
166.3
GTEX-YEC4-0826-SM-5P9FV
40-49 years, male
165.6
GTEX-SJXC-1226-SM-4DM78
60-69 years, male
163.0
GTEX-P78B-1326-SM-3P611
40-49 years, female
162.6
GTEX-14DAQ-1726-SM-5S2R2
60-69 years, female
162.1
GTEX-13NZB-0626-SM-5IFH6
30-39 years, male
160.8
GTEX-14A5I-1726-SM-5QGQ5
50-59 years, female
160.3
GTEX-QDVN-0826-SM-48TZ2
50-59 years, male
159.9
GTEX-12WSI-0226-SM-5GCNA
50-59 years, male
158.9
GTEX-RN64-1826-SM-48FDV
50-59 years, male
157.2
GTEX-Y5V5-0926-SM-4VBPZ
60-69 years, female
156.2
GTEX-14AS3-0126-SM-5Q5F4
40-49 years, female
148.9
GTEX-QEL4-1226-SM-447A4
50-59 years, male
146.2
GTEX-14753-1626-SM-5NQ9L
60-69 years, male
142.9
GTEX-1399T-0826-SM-5IFES
60-69 years, male
141.5
GTEX-145MO-2326-SM-5NQ9K
60-69 years, male
141.2
GTEX-WQUQ-1926-SM-4OOSA
60-69 years, male
138.7
GTEX-S4Z8-0526-SM-4AD4T
60-69 years, male
137.1
GTEX-131XH-0626-SM-5LZWH
50-59 years, male
134.3
GTEX-YB5E-0326-SM-5IFHU
40-49 years, male
133.8
GTEX-12WSL-0226-SM-5CVMJ
50-59 years, male
133.2
GTEX-13VXU-0926-SM-5IFFH
50-59 years, male
133.1
GTEX-13FTW-1126-SM-5J2NV
40-49 years, male
130.9
GTEX-X4EO-1126-SM-4QARQ
60-69 years, female
128.6
GTEX-ZTPG-1426-SM-51MT3
20-29 years, female
128.3
GTEX-YFC4-1526-SM-5IFJS
40-49 years, female
128.1
GTEX-ZVP2-0626-SM-51MSO
50-59 years, male
127.6
GTEX-13FLV-0326-SM-5N9DJ
50-59 years, male
127.1
GTEX-11DXY-0526-SM-5EGGQ
60-69 years, male
126.2
GTEX-RNOR-1426-SM-48FDJ
50-59 years, female
124.6
GTEX-UTHO-2426-SM-4JBHD
60-69 years, male
124.0
GTEX-11EQ9-0526-SM-5A5JZ
30-39 years, male
123.4
GTEX-XOTO-0826-SM-4B65O
50-59 years, male
123.1
GTEX-14C38-1526-SM-5RQJ7
50-59 years, male
122.5
GTEX-11NUK-1226-SM-5P9GM
50-59 years, male
122.3
GTEX-UPK5-1426-SM-4JBHH
40-49 years, male
122.1
GTEX-ZZPU-0426-SM-5GZYH
50-59 years, female
119.8
GTEX-13PVR-0126-SM-5S2PY
60-69 years, female
118.3
GTEX-QEG4-1826-SM-4R1JN
30-39 years, male
116.4
GTEX-1399R-1226-SM-5P9GF
30-39 years, male
114.6
GTEX-WFON-1726-SM-4LVMQ
40-49 years, male
114.1
GTEX-145MF-0826-SM-5QGQA
50-59 years, male
113.3
GTEX-WZTO-0626-SM-4PQYY
40-49 years, male
112.2
GTEX-RWSA-1426-SM-47JXA
40-49 years, male
109.4
GTEX-12WSD-1426-SM-5GCN9
60-69 years, female
108.3
GTEX-ZAB4-0826-SM-5LU9D
40-49 years, male
104.4
GTEX-TKQ2-1726-SM-4DXUP
50-59 years, male
100.5
GTEX-ZF29-2026-SM-4WWB7
60-69 years, female
100.1
GTEX-R53T-0326-SM-48FEC
50-59 years, female
98.9
GTEX-RM2N-1926-SM-48FCU
50-59 years, male
97.0
GTEX-ZYT6-0626-SM-5E45V
30-39 years, male
95.6
GTEX-WYVS-1926-SM-4PQZ2
40-49 years, female
91.8
GTEX-VUSG-0126-SM-4KL1X
50-59 years, male
90.8
GTEX-146FH-1526-SM-5NQBU
50-59 years, female
88.6
GTEX-Z9EW-0426-SM-5CVM9
40-49 years, male
88.6
GTEX-13OW6-2626-SM-5IFF2
50-59 years, male
87.2
GTEX-X3Y1-2726-SM-4PQZH
40-49 years, male
85.0
GTEX-ZVT4-0626-SM-5E45T
50-59 years, female
83.8
GTEX-11GSP-0626-SM-5986T
60-69 years, female
82.8
GTEX-11ZTS-1426-SM-5EQMM
60-69 years, female
82.1
GTEX-QESD-2026-SM-447BI
20-29 years, male
81.5
GTEX-ZAB5-0426-SM-5CVMI
50-59 years, male
81.1
GTEX-13112-1426-SM-5EGH8
50-59 years, male
79.4
GTEX-ZF2S-3026-SM-4WWCH
50-59 years, female
78.5
GTEX-ZPU1-0826-SM-57WG2
40-49 years, male
75.9
GTEX-QV44-0326-SM-4R1KD
50-59 years, male
71.2
GTEX-139YR-0226-SM-5IFEM
50-59 years, male
69.3
GTEX-OOBJ-0826-SM-3NB2K
60-69 years, male
66.2
GTEX-Q734-0326-SM-48U15
40-49 years, female
65.1
GTEX-14E1K-0326-SM-5S2PE
50-59 years, male
63.5
GTEX-147F4-1426-SM-5LUA8
50-59 years, male
62.2
GTEX-11DXZ-0126-SM-5EGGY
50-59 years, male
61.7
GTEX-131XE-0326-SM-5LZVO
50-59 years, male
60.6
GTEX-144GM-1326-SM-5LU5E
20-29 years, male
56.2
GTEX-12ZZZ-1326-SM-59HKW
60-69 years, male
56.0
GTEX-131YS-1626-SM-5HL6C
60-69 years, female
54.9
GTEX-U3ZN-0226-SM-3DB8D
30-39 years, female
54.4
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.