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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 51.3
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 36.3
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 25
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 35
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 61.8
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 37.8
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 53.7
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 64.7
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 561.0
Min RPKM: 18.3
Std RPKM: 103.0
Median RPKM: 104.3
GTEX-REY6-1226-SM-48FDR
60-69 years, male
561.0
GTEX-12WSG-0626-SM-5FQTQ
50-59 years, female
538.9
GTEX-ZAB4-0826-SM-5LU9D
40-49 years, male
448.9
GTEX-VUSG-0126-SM-4KL1X
50-59 years, male
439.7
GTEX-ZYY3-0626-SM-5NQ6W
60-69 years, female
436.4
GTEX-X4EP-1026-SM-4QAS5
60-69 years, female
423.7
GTEX-UTHO-2426-SM-4JBHD
60-69 years, male
365.7
GTEX-ZTPG-1426-SM-51MT3
20-29 years, female
333.2
GTEX-X4XY-1626-SM-46MVN
60-69 years, male
314.4
GTEX-RWSA-1426-SM-47JXA
40-49 years, male
289.6
GTEX-QEL4-1226-SM-447A4
50-59 years, male
249.7
GTEX-139TS-1426-SM-5IFJD
60-69 years, male
249.3
GTEX-13QJC-0726-SM-5RQJK
60-69 years, female
238.8
GTEX-11ZTS-1426-SM-5EQMM
60-69 years, female
228.2
GTEX-ZVT4-0626-SM-5E45T
50-59 years, female
221.0
GTEX-13NZB-0626-SM-5IFH6
30-39 years, male
215.4
GTEX-11ZVC-0726-SM-5FQT9
50-59 years, female
209.6
GTEX-XOTO-0826-SM-4B65O
50-59 years, male
207.0
GTEX-1269C-0626-SM-5FQSS
60-69 years, female
200.1
GTEX-14C38-1526-SM-5RQJ7
50-59 years, male
176.4
GTEX-12KS4-1326-SM-5LUB3
30-39 years, male
171.4
GTEX-YFC4-1526-SM-5IFJS
40-49 years, female
170.4
GTEX-WQUQ-1926-SM-4OOSA
60-69 years, male
169.1
GTEX-1212Z-0226-SM-59HLF
60-69 years, male
163.3
GTEX-ZVT3-1626-SM-5GU66
60-69 years, female
159.4
GTEX-147F4-1426-SM-5LUA8
50-59 years, male
158.8
GTEX-14DAQ-1726-SM-5S2R2
60-69 years, female
156.5
GTEX-14A5I-1726-SM-5QGQ5
50-59 years, female
155.7
GTEX-145LU-1326-SM-5LU9N
50-59 years, male
154.8
GTEX-13113-1326-SM-5GCOI
60-69 years, female
151.4
GTEX-RU72-1426-SM-46MUF
50-59 years, female
149.7
GTEX-144GM-1326-SM-5LU5E
20-29 years, male
148.5
GTEX-Y5V5-0926-SM-4VBPZ
60-69 years, female
147.5
GTEX-QV44-0326-SM-4R1KD
50-59 years, male
144.3
GTEX-145MO-2326-SM-5NQ9K
60-69 years, male
144.2
GTEX-13N2G-0926-SM-5IFGJ
60-69 years, male
143.5
GTEX-132NY-0926-SM-5P9G3
60-69 years, male
143.3
GTEX-12WSL-0226-SM-5CVMJ
50-59 years, male
143.2
GTEX-12WSD-1426-SM-5GCN9
60-69 years, female
141.7
GTEX-QDVN-0826-SM-48TZ2
50-59 years, male
139.2
GTEX-139TU-0826-SM-5IJFG
60-69 years, male
135.1
GTEX-S33H-1626-SM-4AD68
30-39 years, male
135.1
GTEX-S32W-1926-SM-4AD63
50-59 years, female
133.8
GTEX-11NUK-1226-SM-5P9GM
50-59 years, male
133.2
GTEX-11GSP-0626-SM-5986T
60-69 years, female
129.1
GTEX-13NZ9-1326-SM-5MR3V
50-59 years, male
126.4
GTEX-1497J-0726-SM-5Q5D1
60-69 years, male
125.1
GTEX-YECK-1926-SM-4W21H
60-69 years, male
122.7
GTEX-WYVS-1926-SM-4PQZ2
40-49 years, female
121.3
GTEX-R53T-0326-SM-48FEC
50-59 years, female
118.1
GTEX-14E1K-0326-SM-5S2PE
50-59 years, male
115.4
GTEX-139YR-0226-SM-5IFEM
50-59 years, male
113.5
GTEX-UPK5-1426-SM-4JBHH
40-49 years, male
113.5
GTEX-XBEC-1526-SM-4AT68
50-59 years, male
113.3
GTEX-Q2AG-1126-SM-48U1P
40-49 years, female
112.4
GTEX-131XE-0326-SM-5LZVO
50-59 years, male
111.0
GTEX-14753-1626-SM-5NQ9L
60-69 years, male
106.2
GTEX-WFON-1726-SM-4LVMQ
40-49 years, male
104.7
GTEX-RN64-1826-SM-48FDV
50-59 years, male
104.4
GTEX-12696-0826-SM-5EGGE
60-69 years, male
104.3
GTEX-Q734-0326-SM-48U15
40-49 years, female
101.7
GTEX-UPIC-0926-SM-4IHLV
20-29 years, female
100.5
GTEX-1399T-0826-SM-5IFES
60-69 years, male
99.4
GTEX-U3ZN-0226-SM-3DB8D
30-39 years, female
99.1
GTEX-T6MN-1226-SM-3NMA5
50-59 years, male
99.0
GTEX-WZTO-0626-SM-4PQYY
40-49 years, male
95.9
GTEX-13SLX-1226-SM-5S2Q6
50-59 years, female
94.8
GTEX-146FH-1526-SM-5NQBU
50-59 years, female
94.2
GTEX-13O3O-1826-SM-5IFGW
60-69 years, female
93.6
GTEX-13FLV-0326-SM-5N9DJ
50-59 years, male
93.1
GTEX-X4EO-1126-SM-4QARQ
60-69 years, female
92.9
GTEX-S4Z8-0526-SM-4AD4T
60-69 years, male
89.3
GTEX-11OF3-0726-SM-5BC4Z
60-69 years, male
87.8
GTEX-14AS3-0126-SM-5Q5F4
40-49 years, female
87.6
GTEX-RNOR-1426-SM-48FDJ
50-59 years, female
82.3
GTEX-PX3G-0826-SM-48TZS
20-29 years, female
81.3
GTEX-13N11-0926-SM-5IJG2
50-59 years, female
80.6
GTEX-ZAB5-0426-SM-5CVMI
50-59 years, male
80.4
GTEX-X261-1726-SM-4PQYT
50-59 years, male
80.0
GTEX-147JS-1126-SM-5RQIW
60-69 years, male
76.7
GTEX-Y5LM-0426-SM-4VBRO
40-49 years, female
76.6
GTEX-13NYB-1026-SM-5IFH3
40-49 years, male
75.3
GTEX-131YS-1626-SM-5HL6C
60-69 years, female
75.0
GTEX-13FTZ-0726-SM-5IFFY
60-69 years, male
74.3
GTEX-P78B-1326-SM-3P611
40-49 years, female
73.1
GTEX-13OW6-2626-SM-5IFF2
50-59 years, male
72.2
GTEX-SJXC-1226-SM-4DM78
60-69 years, male
71.1
GTEX-QESD-2026-SM-447BI
20-29 years, male
70.9
GTEX-12WSM-0726-SM-5GCOW
60-69 years, male
67.3
GTEX-ZZPU-0426-SM-5GZYH
50-59 years, female
67.0
GTEX-13VXU-0926-SM-5IFFH
50-59 years, male
62.9
GTEX-OOBJ-0826-SM-3NB2K
60-69 years, male
61.3
GTEX-11DXY-0526-SM-5EGGQ
60-69 years, male
61.1
GTEX-ZVP2-0626-SM-51MSO
50-59 years, male
60.0
GTEX-11DXZ-0126-SM-5EGGY
50-59 years, male
59.7
GTEX-YEC4-0826-SM-5P9FV
40-49 years, male
59.3
GTEX-13112-1426-SM-5EGH8
50-59 years, male
59.2
GTEX-11WQC-0726-SM-5EQMR
60-69 years, male
59.0
GTEX-11EQ9-0526-SM-5A5JZ
30-39 years, male
58.3
GTEX-13FTW-1126-SM-5J2NV
40-49 years, male
58.1
GTEX-QEG4-1826-SM-4R1JN
30-39 years, male
55.9
GTEX-TKQ2-1726-SM-4DXUP
50-59 years, male
55.8
GTEX-131XH-0626-SM-5LZWH
50-59 years, male
55.0
GTEX-145MF-0826-SM-5QGQA
50-59 years, male
52.0
GTEX-ZPU1-0826-SM-57WG2
40-49 years, male
49.9
GTEX-ZF2S-3026-SM-4WWCH
50-59 years, female
49.7
GTEX-RTLS-1326-SM-46MUN
60-69 years, female
49.1
GTEX-X3Y1-2726-SM-4PQZH
40-49 years, male
48.4
GTEX-12WSI-0226-SM-5GCNA
50-59 years, male
39.9
GTEX-1399R-1226-SM-5P9GF
30-39 years, male
37.1
GTEX-13PVR-0126-SM-5S2PY
60-69 years, female
36.8
GTEX-ZF29-2026-SM-4WWB7
60-69 years, female
36.7
GTEX-Z9EW-0426-SM-5CVM9
40-49 years, male
32.3
GTEX-ZYT6-0626-SM-5E45V
30-39 years, male
30.7
GTEX-11NV4-1326-SM-5HL6V
60-69 years, male
28.8
GTEX-RM2N-1926-SM-48FCU
50-59 years, male
22.0
GTEX-12ZZZ-1326-SM-59HKW
60-69 years, male
21.3
GTEX-11ZUS-2526-SM-59872
30-39 years, male
19.2
GTEX-YB5E-0326-SM-5IFHU
40-49 years, male
18.3
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.