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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 448.4
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 211.9
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 121.8
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 324.6
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 277.8
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 385.8
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 284
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 482.2
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 1633.0
Min RPKM: 128.0
Std RPKM: 328.5
Median RPKM: 635.8
GTEX-13113-1326-SM-5GCOI
60-69 years, female
1633.0
GTEX-REY6-1226-SM-48FDR
60-69 years, male
1531.8
GTEX-X261-1726-SM-4PQYT
50-59 years, male
1506.4
GTEX-147F4-1426-SM-5LUA8
50-59 years, male
1416.6
GTEX-RTLS-1326-SM-46MUN
60-69 years, female
1416.6
GTEX-132NY-0926-SM-5P9G3
60-69 years, male
1380.4
GTEX-ZTPG-1426-SM-51MT3
20-29 years, female
1340.6
GTEX-139TU-0826-SM-5IJFG
60-69 years, male
1332.9
GTEX-14A5I-1726-SM-5QGQ5
50-59 years, female
1274.0
GTEX-ZYY3-0626-SM-5NQ6W
60-69 years, female
1254.1
GTEX-13QJC-0726-SM-5RQJK
60-69 years, female
1197.4
GTEX-11EQ9-0526-SM-5A5JZ
30-39 years, male
1184.3
GTEX-RU72-1426-SM-46MUF
50-59 years, female
1159.5
GTEX-13NZB-0626-SM-5IFH6
30-39 years, male
1089.9
GTEX-146FH-1526-SM-5NQBU
50-59 years, female
1086.9
GTEX-PX3G-0826-SM-48TZS
20-29 years, female
1037.2
GTEX-11WQC-0726-SM-5EQMR
60-69 years, male
1018.4
GTEX-Y5V5-0926-SM-4VBPZ
60-69 years, female
1016.9
GTEX-X4XY-1626-SM-46MVN
60-69 years, male
1012.7
GTEX-147JS-1126-SM-5RQIW
60-69 years, male
1012.2
GTEX-QEG4-1826-SM-4R1JN
30-39 years, male
998.1
GTEX-1497J-0726-SM-5Q5D1
60-69 years, male
997.6
GTEX-1399T-0826-SM-5IFES
60-69 years, male
989.7
GTEX-Y5LM-0426-SM-4VBRO
40-49 years, female
982.9
GTEX-139TS-1426-SM-5IFJD
60-69 years, male
982.3
GTEX-Q2AG-1126-SM-48U1P
40-49 years, female
965.5
GTEX-S33H-1626-SM-4AD68
30-39 years, male
938.0
GTEX-11OF3-0726-SM-5BC4Z
60-69 years, male
935.9
GTEX-UTHO-2426-SM-4JBHD
60-69 years, male
924.8
GTEX-XBEC-1526-SM-4AT68
50-59 years, male
921.2
GTEX-XOTO-0826-SM-4B65O
50-59 years, male
909.7
GTEX-11DXY-0526-SM-5EGGQ
60-69 years, male
909.2
GTEX-12696-0826-SM-5EGGE
60-69 years, male
904.0
GTEX-QV44-0326-SM-4R1KD
50-59 years, male
890.5
GTEX-YFC4-1526-SM-5IFJS
40-49 years, female
884.2
GTEX-13N11-0926-SM-5IJG2
50-59 years, female
877.6
GTEX-S4Z8-0526-SM-4AD4T
60-69 years, male
866.1
GTEX-12WSL-0226-SM-5CVMJ
50-59 years, male
862.4
GTEX-12WSI-0226-SM-5GCNA
50-59 years, male
858.4
GTEX-145MF-0826-SM-5QGQA
50-59 years, male
850.6
GTEX-11ZTS-1426-SM-5EQMM
60-69 years, female
846.4
GTEX-WZTO-0626-SM-4PQYY
40-49 years, male
840.8
GTEX-13FTZ-0726-SM-5IFFY
60-69 years, male
807.2
GTEX-ZZPU-0426-SM-5GZYH
50-59 years, female
800.7
GTEX-12KS4-1326-SM-5LUB3
30-39 years, male
760.6
GTEX-YECK-1926-SM-4W21H
60-69 years, male
757.8
GTEX-14C38-1526-SM-5RQJ7
50-59 years, male
741.8
GTEX-144GM-1326-SM-5LU5E
20-29 years, male
738.5
GTEX-131XE-0326-SM-5LZVO
50-59 years, male
737.3
GTEX-YB5E-0326-SM-5IFHU
40-49 years, male
715.6
GTEX-13NYB-1026-SM-5IFH3
40-49 years, male
715.2
GTEX-X4EP-1026-SM-4QAS5
60-69 years, female
705.9
GTEX-139YR-0226-SM-5IFEM
50-59 years, male
693.7
GTEX-12WSM-0726-SM-5GCOW
60-69 years, male
675.6
GTEX-13N2G-0926-SM-5IFGJ
60-69 years, male
674.2
GTEX-QDVN-0826-SM-48TZ2
50-59 years, male
654.9
GTEX-11ZVC-0726-SM-5FQT9
50-59 years, female
653.7
GTEX-WQUQ-1926-SM-4OOSA
60-69 years, male
650.4
GTEX-12WSG-0626-SM-5FQTQ
50-59 years, female
645.6
GTEX-1212Z-0226-SM-59HLF
60-69 years, male
635.8
GTEX-P78B-1326-SM-3P611
40-49 years, female
629.2
GTEX-1269C-0626-SM-5FQSS
60-69 years, female
625.2
GTEX-UPIC-0926-SM-4IHLV
20-29 years, female
618.0
GTEX-TKQ2-1726-SM-4DXUP
50-59 years, male
612.4
GTEX-13SLX-1226-SM-5S2Q6
50-59 years, female
608.9
GTEX-13O3O-1826-SM-5IFGW
60-69 years, female
594.4
GTEX-ZAB4-0826-SM-5LU9D
40-49 years, male
594.1
GTEX-T6MN-1226-SM-3NMA5
50-59 years, male
589.9
GTEX-14DAQ-1726-SM-5S2R2
60-69 years, female
580.4
GTEX-S32W-1926-SM-4AD63
50-59 years, female
577.5
GTEX-Q734-0326-SM-48U15
40-49 years, female
575.3
GTEX-145MO-2326-SM-5NQ9K
60-69 years, male
569.5
GTEX-11ZUS-2526-SM-59872
30-39 years, male
567.2
GTEX-13OW6-2626-SM-5IFF2
50-59 years, male
555.4
GTEX-QEL4-1226-SM-447A4
50-59 years, male
550.9
GTEX-ZF2S-3026-SM-4WWCH
50-59 years, female
537.2
GTEX-13VXU-0926-SM-5IFFH
50-59 years, male
536.4
GTEX-145LU-1326-SM-5LU9N
50-59 years, male
535.1
GTEX-YEC4-0826-SM-5P9FV
40-49 years, male
531.8
GTEX-ZVP2-0626-SM-51MSO
50-59 years, male
530.9
GTEX-RN64-1826-SM-48FDV
50-59 years, male
521.6
GTEX-11NV4-1326-SM-5HL6V
60-69 years, male
520.4
GTEX-13NZ9-1326-SM-5MR3V
50-59 years, male
518.2
GTEX-13FTW-1126-SM-5J2NV
40-49 years, male
517.2
GTEX-ZF29-2026-SM-4WWB7
60-69 years, female
511.3
GTEX-VUSG-0126-SM-4KL1X
50-59 years, male
505.2
GTEX-14AS3-0126-SM-5Q5F4
40-49 years, female
502.5
GTEX-ZPU1-0826-SM-57WG2
40-49 years, male
501.9
GTEX-UPK5-1426-SM-4JBHH
40-49 years, male
497.0
GTEX-R53T-0326-SM-48FEC
50-59 years, female
490.4
GTEX-131YS-1626-SM-5HL6C
60-69 years, female
481.0
GTEX-13FLV-0326-SM-5N9DJ
50-59 years, male
430.2
GTEX-U3ZN-0226-SM-3DB8D
30-39 years, female
429.0
GTEX-X4EO-1126-SM-4QARQ
60-69 years, female
427.9
GTEX-14753-1626-SM-5NQ9L
60-69 years, male
423.6
GTEX-ZAB5-0426-SM-5CVMI
50-59 years, male
416.4
GTEX-ZVT3-1626-SM-5GU66
60-69 years, female
391.7
GTEX-Z9EW-0426-SM-5CVM9
40-49 years, male
387.7
GTEX-1399R-1226-SM-5P9GF
30-39 years, male
386.1
GTEX-RWSA-1426-SM-47JXA
40-49 years, male
385.8
GTEX-13112-1426-SM-5EGH8
50-59 years, male
382.9
GTEX-ZVT4-0626-SM-5E45T
50-59 years, female
379.6
GTEX-13PVR-0126-SM-5S2PY
60-69 years, female
376.2
GTEX-RNOR-1426-SM-48FDJ
50-59 years, female
365.1
GTEX-12WSD-1426-SM-5GCN9
60-69 years, female
346.8
GTEX-11GSP-0626-SM-5986T
60-69 years, female
326.8
GTEX-X3Y1-2726-SM-4PQZH
40-49 years, male
319.1
GTEX-SJXC-1226-SM-4DM78
60-69 years, male
302.7
GTEX-11DXZ-0126-SM-5EGGY
50-59 years, male
278.0
GTEX-131XH-0626-SM-5LZWH
50-59 years, male
256.3
GTEX-11NUK-1226-SM-5P9GM
50-59 years, male
255.9
GTEX-QESD-2026-SM-447BI
20-29 years, male
241.6
GTEX-14E1K-0326-SM-5S2PE
50-59 years, male
239.8
GTEX-RM2N-1926-SM-48FCU
50-59 years, male
234.8
GTEX-ZYT6-0626-SM-5E45V
30-39 years, male
233.1
GTEX-WFON-1726-SM-4LVMQ
40-49 years, male
231.3
GTEX-WYVS-1926-SM-4PQZ2
40-49 years, female
170.8
GTEX-OOBJ-0826-SM-3NB2K
60-69 years, male
142.0
GTEX-12ZZZ-1326-SM-59HKW
60-69 years, male
128.0
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.