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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 1338.6
Min RPKM: 9.0
Std RPKM: 227.7
Median RPKM: 255.8
GTEX-14AS3-1726-SM-5RQJV
40-49 years, female
1338.6
GTEX-13PL7-2726-SM-5L3GB
60-69 years, female
1082.8
GTEX-131XG-2126-SM-5DUXG
50-59 years, female
881.2
GTEX-11XUK-1326-SM-5EQM4
40-49 years, female
875.4
GTEX-N7MT-1926-SM-3LK5N
60-69 years, female
768.4
GTEX-QVJO-2526-SM-4R1KB
60-69 years, female
650.2
GTEX-ZC5H-2226-SM-4WAWS
40-49 years, female
602.1
GTEX-11DXX-1726-SM-5H11T
60-69 years, female
589.4
GTEX-X8HC-2826-SM-46MWJ
50-59 years, female
578.7
GTEX-11TTK-2726-SM-5GU58
60-69 years, female
567.7
GTEX-U3ZN-0926-SM-4DXTU
30-39 years, female
548.3
GTEX-P4PP-2526-SM-3P61P
30-39 years, female
526.4
GTEX-T6MO-1226-SM-4DM5S
40-49 years, female
497.1
GTEX-1117F-2526-SM-5GZY6
60-69 years, female
490.5
GTEX-1399U-1526-SM-5J2N7
50-59 years, female
459.0
GTEX-11EMC-1926-SM-5A5JU
60-69 years, female
450.9
GTEX-S341-1226-SM-4AD5S
40-49 years, female
450.0
GTEX-ZVT2-0626-SM-5GICR
50-59 years, female
449.8
GTEX-113JC-1926-SM-5N9GE
50-59 years, female
449.6
GTEX-PWCY-1726-SM-48TD3
20-29 years, female
447.4
GTEX-S7SF-1426-SM-4AT5A
20-29 years, female
424.5
GTEX-TSE9-2526-SM-4DXUS
60-69 years, female
400.6
GTEX-11I78-2026-SM-5987C
50-59 years, female
393.2
GTEX-13QBU-1726-SM-5IJFQ
40-49 years, female
388.1
GTEX-S4P3-1126-SM-4AD52
50-59 years, female
384.4
GTEX-12WSB-2426-SM-5EGJC
60-69 years, female
378.1
GTEX-QCQG-1226-SM-48U23
50-59 years, female
368.0
GTEX-13W3W-2326-SM-5LU4Y
60-69 years, female
365.3
GTEX-ZTPG-2226-SM-57WF9
20-29 years, female
361.3
GTEX-XUW1-0326-SM-4BOOR
50-59 years, female
350.8
GTEX-TMMY-1926-SM-4DXUU
40-49 years, female
350.4
GTEX-14A5I-2726-SM-5SIB3
50-59 years, female
336.0
GTEX-PWN1-2526-SM-48TDS
40-49 years, female
335.7
GTEX-13PVR-1426-SM-5S2PW
60-69 years, female
331.1
GTEX-14BMU-1926-SM-5S2QC
20-29 years, female
326.4
GTEX-1399S-2326-SM-5K7YV
30-39 years, female
320.2
GTEX-ZAJG-2926-SM-5HL8P
50-59 years, female
312.9
GTEX-ZXES-0626-SM-5E45P
30-39 years, female
311.7
GTEX-NL3G-2526-SM-4SOIE
60-69 years, female
311.4
GTEX-145ME-1426-SM-5RQJS
40-49 years, female
302.9
GTEX-146FR-2426-SM-5NQAU
60-69 years, female
294.9
GTEX-P78B-2226-SM-3P5ZZ
40-49 years, female
291.8
GTEX-11VI4-0726-SM-5GU5B
40-49 years, female
279.1
GTEX-W5WG-1026-SM-4LMIF
50-59 years, female
274.0
GTEX-ZP4G-0826-SM-4WWF3
20-29 years, female
268.7
GTEX-YJ8O-1226-SM-5P9JE
40-49 years, female
263.7
GTEX-132AR-1626-SM-5EGHP
50-59 years, female
262.2
GTEX-RWS6-1726-SM-47JXP
60-69 years, female
256.3
GTEX-146FH-2626-SM-5Q5E1
50-59 years, female
255.2
GTEX-11P81-2126-SM-5HL6N
30-39 years, female
251.5
GTEX-ZV6S-1326-SM-59HJA
40-49 years, female
246.7
GTEX-OHPK-2526-SM-3MJH9
50-59 years, female
239.6
GTEX-ZYY3-2626-SM-5N9DH
60-69 years, female
221.9
GTEX-ZE7O-2426-SM-57WD7
50-59 years, female
221.4
GTEX-XUJ4-1626-SM-4BONV
60-69 years, female
218.1
GTEX-13D11-1326-SM-5IJFY
50-59 years, female
208.5
GTEX-Y8LW-1426-SM-5RQJJ
50-59 years, female
206.9
GTEX-ZQG8-1126-SM-51MRL
60-69 years, female
203.4
GTEX-QDT8-2526-SM-48TYX
30-39 years, female
193.5
GTEX-OHPL-2526-SM-3MJGT
60-69 years, female
188.7
GTEX-ZLWG-1126-SM-4WWFQ
50-59 years, female
187.7
GTEX-Y3IK-2226-SM-4YCD4
50-59 years, female
179.8
GTEX-XV7Q-1626-SM-4BRWC
40-49 years, female
175.9
GTEX-13U4I-2026-SM-5LU3L
40-49 years, female
169.2
GTEX-SE5C-1126-SM-4BRWZ
40-49 years, female
166.4
GTEX-147F3-1526-SM-5SIAK
50-59 years, female
162.2
GTEX-PX3G-2526-SM-48TZV
20-29 years, female
160.6
GTEX-PLZ4-2726-SM-3P61A
50-59 years, female
159.8
GTEX-ZZPU-2226-SM-5EGIV
50-59 years, female
158.2
GTEX-RU1J-1426-SM-46MUV
20-29 years, female
157.5
GTEX-PWOO-2026-SM-48TDE
40-49 years, female
151.8
GTEX-S4UY-1326-SM-4AD4X
40-49 years, female
151.3
GTEX-X15G-1926-SM-4PQZQ
50-59 years, female
141.2
GTEX-Y114-1926-SM-4TT8J
50-59 years, female
128.7
GTEX-13N11-1526-SM-5L3FL
50-59 years, female
124.3
GTEX-UPIC-1426-SM-4IHLQ
20-29 years, female
113.8
GTEX-13QIC-1826-SM-5J1MY
60-69 years, female
111.1
GTEX-12WSJ-1326-SM-5GCOB
40-49 years, female
110.8
GTEX-WEY5-0826-SM-4LMIH
40-49 years, female
106.7
GTEX-13OVI-0926-SM-5J1MI
60-69 years, female
99.1
GTEX-ZYWO-2026-SM-5GIDA
40-49 years, female
85.0
GTEX-ZYVF-0326-SM-5GIES
50-59 years, female
83.4
GTEX-TML8-1126-SM-4DXSS
40-49 years, female
79.4
GTEX-T2IS-1926-SM-4DM74
20-29 years, female
71.8
GTEX-11EM3-1826-SM-5A5KO
20-29 years, female
68.5
GTEX-Q734-1426-SM-48TZQ
40-49 years, female
66.4
GTEX-UJHI-1326-SM-4IHJO
50-59 years, female
65.7
GTEX-14DAQ-2326-SM-5S2QX
60-69 years, female
63.5
GTEX-131YS-2426-SM-5J2OD
60-69 years, female
56.5
GTEX-ZGAY-2226-SM-4YCCX
40-49 years, female
48.1
GTEX-ZVT3-2726-SM-5GU5X
60-69 years, female
42.4
GTEX-WRHU-2926-SM-4MVNQ
50-59 years, female
42.3
GTEX-12WSD-2926-SM-5LZUH
60-69 years, female
37.3
GTEX-11GSP-2226-SM-5HL5Q
60-69 years, female
28.3
GTEX-12ZZX-1926-SM-5EGKC
40-49 years, female
15.8
GTEX-YFC4-2926-SM-5IFJ8
40-49 years, female
9.0
Show all
VAGINA - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.