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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 442.2
Min RPKM: 120.7
Std RPKM: 72.1
Median RPKM: 244.7
GTEX-NL3G-2526-SM-4SOIE
60-69 years, female
442.2
GTEX-13D11-1326-SM-5IJFY
50-59 years, female
422.0
GTEX-1117F-2526-SM-5GZY6
60-69 years, female
421.3
GTEX-ZE7O-2426-SM-57WD7
50-59 years, female
415.6
GTEX-11P81-2126-SM-5HL6N
30-39 years, female
397.9
GTEX-ZAJG-2926-SM-5HL8P
50-59 years, female
394.7
GTEX-ZVT3-2726-SM-5GU5X
60-69 years, female
389.6
GTEX-11TTK-2726-SM-5GU58
60-69 years, female
380.1
GTEX-113JC-1926-SM-5N9GE
50-59 years, female
379.6
GTEX-Y8LW-1426-SM-5RQJJ
50-59 years, female
362.3
GTEX-ZC5H-2226-SM-4WAWS
40-49 years, female
347.6
GTEX-T2IS-1926-SM-4DM74
20-29 years, female
342.2
GTEX-OHPL-2526-SM-3MJGT
60-69 years, female
341.8
GTEX-11EMC-1926-SM-5A5JU
60-69 years, female
336.0
GTEX-PWOO-2026-SM-48TDE
40-49 years, female
335.7
GTEX-14A5I-2726-SM-5SIB3
50-59 years, female
334.1
GTEX-ZTPG-2226-SM-57WF9
20-29 years, female
329.2
GTEX-OHPK-2526-SM-3MJH9
50-59 years, female
329.0
GTEX-12WSB-2426-SM-5EGJC
60-69 years, female
325.1
GTEX-X8HC-2826-SM-46MWJ
50-59 years, female
320.5
GTEX-S7SF-1426-SM-4AT5A
20-29 years, female
319.7
GTEX-ZYY3-2626-SM-5N9DH
60-69 years, female
317.0
GTEX-SE5C-1126-SM-4BRWZ
40-49 years, female
309.7
GTEX-11DXX-1726-SM-5H11T
60-69 years, female
308.8
GTEX-QDT8-2526-SM-48TYX
30-39 years, female
303.0
GTEX-XV7Q-1626-SM-4BRWC
40-49 years, female
297.9
GTEX-QCQG-1226-SM-48U23
50-59 years, female
296.3
GTEX-132AR-1626-SM-5EGHP
50-59 years, female
290.8
GTEX-13PVR-1426-SM-5S2PW
60-69 years, female
288.5
GTEX-13QIC-1826-SM-5J1MY
60-69 years, female
284.6
GTEX-ZZPU-2226-SM-5EGIV
50-59 years, female
279.7
GTEX-PLZ4-2726-SM-3P61A
50-59 years, female
277.3
GTEX-14DAQ-2326-SM-5S2QX
60-69 years, female
275.4
GTEX-S4UY-1326-SM-4AD4X
40-49 years, female
274.0
GTEX-ZV6S-1326-SM-59HJA
40-49 years, female
269.1
GTEX-TSE9-2526-SM-4DXUS
60-69 years, female
266.8
GTEX-XUJ4-1626-SM-4BONV
60-69 years, female
266.7
GTEX-146FH-2626-SM-5Q5E1
50-59 years, female
265.6
GTEX-S341-1226-SM-4AD5S
40-49 years, female
262.8
GTEX-1399S-2326-SM-5K7YV
30-39 years, female
262.5
GTEX-S4P3-1126-SM-4AD52
50-59 years, female
259.1
GTEX-ZLWG-1126-SM-4WWFQ
50-59 years, female
258.2
GTEX-13QBU-1726-SM-5IJFQ
40-49 years, female
255.8
GTEX-131YS-2426-SM-5J2OD
60-69 years, female
254.7
GTEX-1399U-1526-SM-5J2N7
50-59 years, female
247.9
GTEX-131XG-2126-SM-5DUXG
50-59 years, female
246.4
GTEX-RWS6-1726-SM-47JXP
60-69 years, female
245.4
GTEX-12ZZX-1926-SM-5EGKC
40-49 years, female
245.0
GTEX-11GSP-2226-SM-5HL5Q
60-69 years, female
244.3
GTEX-UPIC-1426-SM-4IHLQ
20-29 years, female
244.3
GTEX-T6MO-1226-SM-4DM5S
40-49 years, female
239.2
GTEX-14AS3-1726-SM-5RQJV
40-49 years, female
236.2
GTEX-PWCY-1726-SM-48TD3
20-29 years, female
235.0
GTEX-P78B-2226-SM-3P5ZZ
40-49 years, female
234.7
GTEX-ZYVF-0326-SM-5GIES
50-59 years, female
233.9
GTEX-X15G-1926-SM-4PQZQ
50-59 years, female
232.1
GTEX-ZVT2-0626-SM-5GICR
50-59 years, female
230.7
GTEX-N7MT-1926-SM-3LK5N
60-69 years, female
228.1
GTEX-11I78-2026-SM-5987C
50-59 years, female
226.9
GTEX-13OVI-0926-SM-5J1MI
60-69 years, female
225.9
GTEX-11XUK-1326-SM-5EQM4
40-49 years, female
224.8
GTEX-YJ8O-1226-SM-5P9JE
40-49 years, female
224.5
GTEX-P4PP-2526-SM-3P61P
30-39 years, female
222.9
GTEX-TMMY-1926-SM-4DXUU
40-49 years, female
220.5
GTEX-PX3G-2526-SM-48TZV
20-29 years, female
218.6
GTEX-ZQG8-1126-SM-51MRL
60-69 years, female
218.0
GTEX-Q734-1426-SM-48TZQ
40-49 years, female
215.4
GTEX-145ME-1426-SM-5RQJS
40-49 years, female
215.3
GTEX-14BMU-1926-SM-5S2QC
20-29 years, female
211.3
GTEX-146FR-2426-SM-5NQAU
60-69 years, female
207.3
GTEX-ZYWO-2026-SM-5GIDA
40-49 years, female
206.8
GTEX-ZXES-0626-SM-5E45P
30-39 years, female
206.1
GTEX-WRHU-2926-SM-4MVNQ
50-59 years, female
205.7
GTEX-U3ZN-0926-SM-4DXTU
30-39 years, female
200.8
GTEX-147F3-1526-SM-5SIAK
50-59 years, female
196.1
GTEX-TML8-1126-SM-4DXSS
40-49 years, female
193.3
GTEX-PWN1-2526-SM-48TDS
40-49 years, female
190.4
GTEX-13PL7-2726-SM-5L3GB
60-69 years, female
183.2
GTEX-ZP4G-0826-SM-4WWF3
20-29 years, female
182.7
GTEX-Y3IK-2226-SM-4YCD4
50-59 years, female
181.4
GTEX-13W3W-2326-SM-5LU4Y
60-69 years, female
180.7
GTEX-13U4I-2026-SM-5LU3L
40-49 years, female
180.0
GTEX-W5WG-1026-SM-4LMIF
50-59 years, female
179.3
GTEX-XUW1-0326-SM-4BOOR
50-59 years, female
177.6
GTEX-WEY5-0826-SM-4LMIH
40-49 years, female
175.0
GTEX-12WSD-2926-SM-5LZUH
60-69 years, female
170.6
GTEX-11VI4-0726-SM-5GU5B
40-49 years, female
170.1
GTEX-UJHI-1326-SM-4IHJO
50-59 years, female
169.5
GTEX-ZGAY-2226-SM-4YCCX
40-49 years, female
168.6
GTEX-QVJO-2526-SM-4R1KB
60-69 years, female
165.8
GTEX-13N11-1526-SM-5L3FL
50-59 years, female
159.1
GTEX-YFC4-2926-SM-5IFJ8
40-49 years, female
157.7
GTEX-Y114-1926-SM-4TT8J
50-59 years, female
153.7
GTEX-12WSJ-1326-SM-5GCOB
40-49 years, female
148.8
GTEX-RU1J-1426-SM-46MUV
20-29 years, female
146.5
GTEX-11EM3-1826-SM-5A5KO
20-29 years, female
120.7
Show all
VAGINA - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.