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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 1357.8
Min RPKM: 243.3
Std RPKM: 259.9
Median RPKM: 654.2
GTEX-111CU-1326-SM-5NQ8L
50-59 years, male
1357.8
GTEX-WFG8-1626-SM-4LVMB
20-29 years, male
1337.6
GTEX-YB5E-1526-SM-5IFIE
40-49 years, male
1283.9
GTEX-14DAR-1426-SM-5RQIR
50-59 years, male
1266.9
GTEX-YF7O-1826-SM-5IFIU
50-59 years, male
1173.1
GTEX-1399S-2026-SM-5KM4B
30-39 years, female
1161.6
GTEX-ZTSS-0926-SM-59865
40-49 years, male
1133.9
GTEX-YEC4-1726-SM-4W21E
40-49 years, male
1111.1
GTEX-111YS-1426-SM-5GID8
60-69 years, male
1103.3
GTEX-11DXX-1626-SM-5H11H
60-69 years, female
1085.1
GTEX-13113-1226-SM-5EGHT
60-69 years, female
1075.8
GTEX-ZZ64-0526-SM-5GZXM
20-29 years, male
1073.9
GTEX-ZLV1-1126-SM-4WWBW
60-69 years, female
1061.0
GTEX-145LT-1026-SM-5LU9O
40-49 years, male
1045.7
GTEX-131XG-1726-SM-5LZUR
50-59 years, female
984.9
GTEX-ZPCL-1726-SM-57WEO
60-69 years, female
964.5
GTEX-Y5LM-1626-SM-4VDTB
40-49 years, female
963.4
GTEX-13D11-0726-SM-5LZZB
50-59 years, female
934.2
GTEX-WFG7-1726-SM-4LVME
20-29 years, male
911.2
GTEX-XUZC-1426-SM-4BRV3
30-39 years, female
899.9
GTEX-Y9LG-1626-SM-5IFHM
30-39 years, male
890.2
GTEX-ZXES-1526-SM-5NQ95
30-39 years, female
885.3
GTEX-X5EB-1626-SM-4E3IV
40-49 years, male
881.3
GTEX-13111-1426-SM-5DUW3
50-59 years, male
870.2
GTEX-1122O-1326-SM-5H11F
60-69 years, female
863.0
GTEX-117YX-0326-SM-5GICL
50-59 years, male
839.6
GTEX-11EQ9-1326-SM-5985X
30-39 years, male
829.7
GTEX-ZLFU-1526-SM-4WWBT
40-49 years, male
829.7
GTEX-13QBU-1926-SM-5IJEW
40-49 years, female
818.2
GTEX-11I78-1126-SM-5A5K5
50-59 years, female
807.3
GTEX-11DXZ-1326-SM-5H11X
50-59 years, male
767.8
GTEX-13RTK-0826-SM-5Q5C6
20-29 years, male
754.1
GTEX-11P82-0826-SM-5P9GU
20-29 years, male
745.9
GTEX-13O61-1326-SM-5KM31
60-69 years, male
738.1
GTEX-XGQ4-1326-SM-4GIDU
50-59 years, male
737.5
GTEX-WRHK-1026-SM-4MVOD
20-29 years, female
717.1
GTEX-11P7K-1626-SM-5GU63
30-39 years, male
710.6
GTEX-13PL7-2626-SM-5IFH4
60-69 years, female
693.2
GTEX-139YR-2226-SM-5IFFW
50-59 years, male
687.7
GTEX-13FH7-1226-SM-5IJFK
50-59 years, female
671.2
GTEX-ZTX8-0526-SM-59HLD
20-29 years, male
670.2
GTEX-WEY5-1526-SM-4LMJF
40-49 years, female
668.7
GTEX-13CF3-1226-SM-5LZXN
60-69 years, female
662.4
GTEX-ZVZP-1826-SM-5GZXB
50-59 years, male
659.8
GTEX-XBED-1426-SM-4AT4G
60-69 years, male
648.7
GTEX-1192X-2526-SM-59868
50-59 years, male
642.1
GTEX-XXEK-1026-SM-4BRUW
50-59 years, male
638.5
GTEX-WFJO-0926-SM-4LVM2
30-39 years, male
630.1
GTEX-ZYWO-1526-SM-5SIAL
40-49 years, female
625.4
GTEX-ZQUD-0926-SM-57WE3
30-39 years, male
620.8
GTEX-13OVI-1926-SM-5IJCG
60-69 years, female
612.1
GTEX-ZA64-1226-SM-5HL7B
20-29 years, male
599.7
GTEX-13FTW-2026-SM-5IJE2
40-49 years, male
598.6
GTEX-148VJ-2226-SM-5NQ9M
70-79 years, male
592.6
GTEX-WQUQ-2426-SM-4MVNW
60-69 years, male
592.3
GTEX-14E6E-1626-SM-5RQI7
30-39 years, male
588.1
GTEX-UPK5-2026-SM-4JBIM
40-49 years, male
577.2
GTEX-ZPIC-2326-SM-57WDW
40-49 years, female
571.5
GTEX-131XF-1326-SM-5GCMQ
60-69 years, male
565.0
GTEX-X15G-1426-SM-4PQZK
50-59 years, female
564.6
GTEX-139T6-1026-SM-5IJGC
50-59 years, male
560.8
GTEX-145ME-0926-SM-5O9AR
40-49 years, female
548.9
GTEX-ZYFG-2026-SM-5E43Y
60-69 years, female
547.8
GTEX-ZVT2-2126-SM-5NQ93
50-59 years, female
538.4
GTEX-XMK1-1826-SM-4B66F
40-49 years, male
537.9
GTEX-ZQG8-2526-SM-57WEQ
60-69 years, female
533.4
GTEX-ZVP2-1726-SM-5GU5P
50-59 years, male
518.5
GTEX-XAJ8-0526-SM-47JYK
40-49 years, male
512.0
GTEX-1399U-2126-SM-5IFEZ
50-59 years, female
503.0
GTEX-VJYA-0926-SM-4KL1N
60-69 years, male
499.5
GTEX-11XUK-1426-SM-5EQMG
40-49 years, female
492.7
GTEX-Y114-1426-SM-4TT6W
50-59 years, female
481.6
GTEX-ZTPG-2626-SM-57WFX
20-29 years, female
463.6
GTEX-WH7G-1626-SM-4LVMY
40-49 years, male
454.8
GTEX-1399R-2026-SM-5K7WN
30-39 years, male
454.7
GTEX-13O21-1026-SM-5IJDU
50-59 years, male
451.0
GTEX-12BJ1-1926-SM-5HL9Z
60-69 years, male
442.1
GTEX-12WSK-1526-SM-5CVNO
40-49 years, female
429.0
GTEX-11NSD-1726-SM-5N9C3
20-29 years, male
426.6
GTEX-Z9EW-0926-SM-5CVMM
40-49 years, male
417.9
GTEX-ZP4G-1626-SM-57WGD
20-29 years, female
417.7
GTEX-ZEX8-1826-SM-57WBH
50-59 years, male
417.6
GTEX-11VI4-1626-SM-5EQKO
40-49 years, female
412.1
GTEX-ZF2S-1726-SM-57WFT
50-59 years, female
339.6
GTEX-133LE-1426-SM-5IFH1
20-29 years, female
309.9
GTEX-Y3IK-1726-SM-4YCCR
50-59 years, female
264.7
GTEX-VUSG-1726-SM-4KKZL
50-59 years, male
247.5
GTEX-ZC5H-2326-SM-4WAYT
40-49 years, female
243.3
Show all
SMALL INTESTINE - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.