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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 1381.8
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 1882
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 1304.8
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 1554.9
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 1546.2
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 1669.4
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 1417.5
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 2086.4
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 1183.0
Min RPKM: 68.6
Std RPKM: 158.5
Median RPKM: 235.4
GTEX-13N11-0926-SM-5IJG2
50-59 years, female
1183.0
GTEX-R53T-0326-SM-48FEC
50-59 years, female
794.6
GTEX-ZTPG-1426-SM-51MT3
20-29 years, female
757.1
GTEX-S32W-1926-SM-4AD63
50-59 years, female
627.2
GTEX-12WSG-0626-SM-5FQTQ
50-59 years, female
612.7
GTEX-Q734-0326-SM-48U15
40-49 years, female
581.4
GTEX-Y5LM-0426-SM-4VBRO
40-49 years, female
575.3
GTEX-14C38-1526-SM-5RQJ7
50-59 years, male
557.4
GTEX-YB5E-0326-SM-5IFHU
40-49 years, male
526.1
GTEX-13NZ9-1326-SM-5MR3V
50-59 years, male
500.7
GTEX-P78B-1326-SM-3P611
40-49 years, female
456.7
GTEX-QESD-2026-SM-447BI
20-29 years, male
431.0
GTEX-13FTW-1126-SM-5J2NV
40-49 years, male
418.2
GTEX-QV44-0326-SM-4R1KD
50-59 years, male
417.8
GTEX-1399R-1226-SM-5P9GF
30-39 years, male
412.9
GTEX-13PVR-0126-SM-5S2PY
60-69 years, female
403.4
GTEX-PX3G-0826-SM-48TZS
20-29 years, female
390.2
GTEX-UTHO-2426-SM-4JBHD
60-69 years, male
383.9
GTEX-UPIC-0926-SM-4IHLV
20-29 years, female
376.8
GTEX-ZF2S-3026-SM-4WWCH
50-59 years, female
372.1
GTEX-QDVN-0826-SM-48TZ2
50-59 years, male
368.9
GTEX-YFC4-1526-SM-5IFJS
40-49 years, female
363.0
GTEX-145MF-0826-SM-5QGQA
50-59 years, male
357.6
GTEX-1497J-0726-SM-5Q5D1
60-69 years, male
357.4
GTEX-ZZPU-0426-SM-5GZYH
50-59 years, female
348.3
GTEX-X4EO-1126-SM-4QARQ
60-69 years, female
346.9
GTEX-ZF29-2026-SM-4WWB7
60-69 years, female
345.0
GTEX-146FH-1526-SM-5NQBU
50-59 years, female
343.0
GTEX-X3Y1-2726-SM-4PQZH
40-49 years, male
342.5
GTEX-131XE-0326-SM-5LZVO
50-59 years, male
330.7
GTEX-RN64-1826-SM-48FDV
50-59 years, male
322.0
GTEX-WYVS-1926-SM-4PQZ2
40-49 years, female
318.6
GTEX-147F4-1426-SM-5LUA8
50-59 years, male
307.3
GTEX-14AS3-0126-SM-5Q5F4
40-49 years, female
307.3
GTEX-S33H-1626-SM-4AD68
30-39 years, male
303.0
GTEX-ZYY3-0626-SM-5NQ6W
60-69 years, female
299.7
GTEX-XOTO-0826-SM-4B65O
50-59 years, male
295.4
GTEX-QEL4-1226-SM-447A4
50-59 years, male
295.0
GTEX-WFON-1726-SM-4LVMQ
40-49 years, male
291.5
GTEX-S4Z8-0526-SM-4AD4T
60-69 years, male
291.3
GTEX-QEG4-1826-SM-4R1JN
30-39 years, male
289.5
GTEX-ZAB5-0426-SM-5CVMI
50-59 years, male
280.2
GTEX-OOBJ-0826-SM-3NB2K
60-69 years, male
275.4
GTEX-REY6-1226-SM-48FDR
60-69 years, male
267.0
GTEX-147JS-1126-SM-5RQIW
60-69 years, male
263.1
GTEX-TKQ2-1726-SM-4DXUP
50-59 years, male
260.6
GTEX-X4XY-1626-SM-46MVN
60-69 years, male
260.3
GTEX-ZYT6-0626-SM-5E45V
30-39 years, male
256.8
GTEX-RWSA-1426-SM-47JXA
40-49 years, male
254.7
GTEX-139TU-0826-SM-5IJFG
60-69 years, male
253.9
GTEX-WQUQ-1926-SM-4OOSA
60-69 years, male
250.6
GTEX-ZAB4-0826-SM-5LU9D
40-49 years, male
243.5
GTEX-11DXZ-0126-SM-5EGGY
50-59 years, male
242.3
GTEX-UPK5-1426-SM-4JBHH
40-49 years, male
240.5
GTEX-X4EP-1026-SM-4QAS5
60-69 years, female
239.7
GTEX-ZVP2-0626-SM-51MSO
50-59 years, male
237.5
GTEX-RM2N-1926-SM-48FCU
50-59 years, male
237.2
GTEX-132NY-0926-SM-5P9G3
60-69 years, male
237.0
GTEX-YEC4-0826-SM-5P9FV
40-49 years, male
235.6
GTEX-Z9EW-0426-SM-5CVM9
40-49 years, male
235.4
GTEX-11NUK-1226-SM-5P9GM
50-59 years, male
234.8
GTEX-12WSL-0226-SM-5CVMJ
50-59 years, male
232.5
GTEX-RNOR-1426-SM-48FDJ
50-59 years, female
229.9
GTEX-ZVT3-1626-SM-5GU66
60-69 years, female
228.4
GTEX-ZPU1-0826-SM-57WG2
40-49 years, male
225.2
GTEX-T6MN-1226-SM-3NMA5
50-59 years, male
221.0
GTEX-14E1K-0326-SM-5S2PE
50-59 years, male
220.4
GTEX-11GSP-0626-SM-5986T
60-69 years, female
219.5
GTEX-11DXY-0526-SM-5EGGQ
60-69 years, male
219.1
GTEX-11WQC-0726-SM-5EQMR
60-69 years, male
215.8
GTEX-VUSG-0126-SM-4KL1X
50-59 years, male
213.6
GTEX-SJXC-1226-SM-4DM78
60-69 years, male
213.5
GTEX-13FLV-0326-SM-5N9DJ
50-59 years, male
211.7
GTEX-139TS-1426-SM-5IFJD
60-69 years, male
211.6
GTEX-11EQ9-0526-SM-5A5JZ
30-39 years, male
211.1
GTEX-XBEC-1526-SM-4AT68
50-59 years, male
192.5
GTEX-131YS-1626-SM-5HL6C
60-69 years, female
190.0
GTEX-145LU-1326-SM-5LU9N
50-59 years, male
188.5
GTEX-139YR-0226-SM-5IFEM
50-59 years, male
185.4
GTEX-12WSD-1426-SM-5GCN9
60-69 years, female
184.3
GTEX-1269C-0626-SM-5FQSS
60-69 years, female
183.9
GTEX-YECK-1926-SM-4W21H
60-69 years, male
183.9
GTEX-1399T-0826-SM-5IFES
60-69 years, male
180.9
GTEX-RU72-1426-SM-46MUF
50-59 years, female
180.4
GTEX-14DAQ-1726-SM-5S2R2
60-69 years, female
180.2
GTEX-12WSI-0226-SM-5GCNA
50-59 years, male
179.9
GTEX-13VXU-0926-SM-5IFFH
50-59 years, male
178.0
GTEX-13113-1326-SM-5GCOI
60-69 years, female
176.5
GTEX-14753-1626-SM-5NQ9L
60-69 years, male
176.4
GTEX-U3ZN-0226-SM-3DB8D
30-39 years, female
175.4
GTEX-144GM-1326-SM-5LU5E
20-29 years, male
173.7
GTEX-Y5V5-0926-SM-4VBPZ
60-69 years, female
171.0
GTEX-13SLX-1226-SM-5S2Q6
50-59 years, female
168.0
GTEX-12KS4-1326-SM-5LUB3
30-39 years, male
167.2
GTEX-13N2G-0926-SM-5IFGJ
60-69 years, male
166.2
GTEX-RTLS-1326-SM-46MUN
60-69 years, female
152.4
GTEX-11ZUS-2526-SM-59872
30-39 years, male
147.4
GTEX-13O3O-1826-SM-5IFGW
60-69 years, female
144.9
GTEX-13OW6-2626-SM-5IFF2
50-59 years, male
144.3
GTEX-13QJC-0726-SM-5RQJK
60-69 years, female
143.7
GTEX-ZVT4-0626-SM-5E45T
50-59 years, female
143.5
GTEX-1212Z-0226-SM-59HLF
60-69 years, male
141.8
GTEX-11ZTS-1426-SM-5EQMM
60-69 years, female
140.6
GTEX-12696-0826-SM-5EGGE
60-69 years, male
137.0
GTEX-13NYB-1026-SM-5IFH3
40-49 years, male
137.0
GTEX-WZTO-0626-SM-4PQYY
40-49 years, male
131.1
GTEX-13112-1426-SM-5EGH8
50-59 years, male
130.2
GTEX-Q2AG-1126-SM-48U1P
40-49 years, female
128.4
GTEX-145MO-2326-SM-5NQ9K
60-69 years, male
126.5
GTEX-12WSM-0726-SM-5GCOW
60-69 years, male
123.4
GTEX-11OF3-0726-SM-5BC4Z
60-69 years, male
122.2
GTEX-131XH-0626-SM-5LZWH
50-59 years, male
118.2
GTEX-11ZVC-0726-SM-5FQT9
50-59 years, female
107.3
GTEX-13FTZ-0726-SM-5IFFY
60-69 years, male
105.7
GTEX-14A5I-1726-SM-5QGQ5
50-59 years, female
102.0
GTEX-12ZZZ-1326-SM-59HKW
60-69 years, male
95.9
GTEX-11NV4-1326-SM-5HL6V
60-69 years, male
92.1
GTEX-X261-1726-SM-4PQYT
50-59 years, male
85.6
GTEX-13NZB-0626-SM-5IFH6
30-39 years, male
68.6
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.