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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 593.2
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 64.2
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 181.2
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 513.4
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 483.2
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 633.3
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 477.8
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 281.4
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 1043.7
Min RPKM: 180.9
Std RPKM: 117.6
Median RPKM: 598.3
GTEX-UPIC-0926-SM-4IHLV
20-29 years, female
1043.7
GTEX-REY6-1226-SM-48FDR
60-69 years, male
954.3
GTEX-13SLX-1226-SM-5S2Q6
50-59 years, female
895.8
GTEX-14DAQ-1726-SM-5S2R2
60-69 years, female
791.3
GTEX-YEC4-0826-SM-5P9FV
40-49 years, male
789.7
GTEX-X261-1726-SM-4PQYT
50-59 years, male
787.4
GTEX-ZYT6-0626-SM-5E45V
30-39 years, male
766.1
GTEX-139TS-1426-SM-5IFJD
60-69 years, male
758.8
GTEX-XOTO-0826-SM-4B65O
50-59 years, male
744.7
GTEX-X4EP-1026-SM-4QAS5
60-69 years, female
741.2
GTEX-PX3G-0826-SM-48TZS
20-29 years, female
737.0
GTEX-132NY-0926-SM-5P9G3
60-69 years, male
736.3
GTEX-14753-1626-SM-5NQ9L
60-69 years, male
724.8
GTEX-1212Z-0226-SM-59HLF
60-69 years, male
719.9
GTEX-13NZB-0626-SM-5IFH6
30-39 years, male
716.2
GTEX-11NUK-1226-SM-5P9GM
50-59 years, male
712.2
GTEX-13NZ9-1326-SM-5MR3V
50-59 years, male
711.5
GTEX-X3Y1-2726-SM-4PQZH
40-49 years, male
705.9
GTEX-WFON-1726-SM-4LVMQ
40-49 years, male
704.0
GTEX-UPK5-1426-SM-4JBHH
40-49 years, male
697.4
GTEX-14A5I-1726-SM-5QGQ5
50-59 years, female
691.1
GTEX-ZZPU-0426-SM-5GZYH
50-59 years, female
690.5
GTEX-RN64-1826-SM-48FDV
50-59 years, male
688.5
GTEX-145MO-2326-SM-5NQ9K
60-69 years, male
684.7
GTEX-QDVN-0826-SM-48TZ2
50-59 years, male
673.1
GTEX-S4Z8-0526-SM-4AD4T
60-69 years, male
672.7
GTEX-13113-1326-SM-5GCOI
60-69 years, female
672.4
GTEX-WQUQ-1926-SM-4OOSA
60-69 years, male
669.5
GTEX-12696-0826-SM-5EGGE
60-69 years, male
669.1
GTEX-12KS4-1326-SM-5LUB3
30-39 years, male
665.8
GTEX-T6MN-1226-SM-3NMA5
50-59 years, male
659.4
GTEX-13PVR-0126-SM-5S2PY
60-69 years, female
652.1
GTEX-S33H-1626-SM-4AD68
30-39 years, male
647.7
GTEX-Q2AG-1126-SM-48U1P
40-49 years, female
645.8
GTEX-ZF2S-3026-SM-4WWCH
50-59 years, female
644.4
GTEX-13FLV-0326-SM-5N9DJ
50-59 years, male
643.8
GTEX-RM2N-1926-SM-48FCU
50-59 years, male
642.5
GTEX-14E1K-0326-SM-5S2PE
50-59 years, male
638.8
GTEX-Y5V5-0926-SM-4VBPZ
60-69 years, female
637.9
GTEX-RNOR-1426-SM-48FDJ
50-59 years, female
636.6
GTEX-P78B-1326-SM-3P611
40-49 years, female
634.3
GTEX-1399R-1226-SM-5P9GF
30-39 years, male
633.5
GTEX-ZVP2-0626-SM-51MSO
50-59 years, male
630.0
GTEX-WYVS-1926-SM-4PQZ2
40-49 years, female
626.8
GTEX-QEL4-1226-SM-447A4
50-59 years, male
625.7
GTEX-RU72-1426-SM-46MUF
50-59 years, female
619.8
GTEX-13N2G-0926-SM-5IFGJ
60-69 years, male
617.4
GTEX-VUSG-0126-SM-4KL1X
50-59 years, male
615.3
GTEX-11DXZ-0126-SM-5EGGY
50-59 years, male
614.0
GTEX-13FTW-1126-SM-5J2NV
40-49 years, male
613.8
GTEX-RWSA-1426-SM-47JXA
40-49 years, male
613.3
GTEX-RTLS-1326-SM-46MUN
60-69 years, female
612.3
GTEX-YECK-1926-SM-4W21H
60-69 years, male
611.9
GTEX-12WSL-0226-SM-5CVMJ
50-59 years, male
606.2
GTEX-Z9EW-0426-SM-5CVM9
40-49 years, male
604.3
GTEX-YFC4-1526-SM-5IFJS
40-49 years, female
601.8
GTEX-11WQC-0726-SM-5EQMR
60-69 years, male
600.7
GTEX-144GM-1326-SM-5LU5E
20-29 years, male
599.6
GTEX-ZF29-2026-SM-4WWB7
60-69 years, female
599.0
GTEX-R53T-0326-SM-48FEC
50-59 years, female
598.3
GTEX-11DXY-0526-SM-5EGGQ
60-69 years, male
595.4
GTEX-XBEC-1526-SM-4AT68
50-59 years, male
595.2
GTEX-13QJC-0726-SM-5RQJK
60-69 years, female
590.3
GTEX-OOBJ-0826-SM-3NB2K
60-69 years, male
589.5
GTEX-14AS3-0126-SM-5Q5F4
40-49 years, female
583.0
GTEX-SJXC-1226-SM-4DM78
60-69 years, male
580.7
GTEX-145MF-0826-SM-5QGQA
50-59 years, male
579.2
GTEX-145LU-1326-SM-5LU9N
50-59 years, male
576.9
GTEX-139YR-0226-SM-5IFEM
50-59 years, male
576.2
GTEX-TKQ2-1726-SM-4DXUP
50-59 years, male
572.5
GTEX-ZPU1-0826-SM-57WG2
40-49 years, male
571.5
GTEX-X4XY-1626-SM-46MVN
60-69 years, male
571.2
GTEX-QESD-2026-SM-447BI
20-29 years, male
570.4
GTEX-146FH-1526-SM-5NQBU
50-59 years, female
566.1
GTEX-11NV4-1326-SM-5HL6V
60-69 years, male
562.5
GTEX-147JS-1126-SM-5RQIW
60-69 years, male
561.0
GTEX-11EQ9-0526-SM-5A5JZ
30-39 years, male
560.0
GTEX-139TU-0826-SM-5IJFG
60-69 years, male
559.8
GTEX-1497J-0726-SM-5Q5D1
60-69 years, male
555.4
GTEX-131YS-1626-SM-5HL6C
60-69 years, female
549.8
GTEX-11ZVC-0726-SM-5FQT9
50-59 years, female
546.8
GTEX-ZAB5-0426-SM-5CVMI
50-59 years, male
543.8
GTEX-1269C-0626-SM-5FQSS
60-69 years, female
539.7
GTEX-12WSD-1426-SM-5GCN9
60-69 years, female
538.0
GTEX-QV44-0326-SM-4R1KD
50-59 years, male
537.2
GTEX-S32W-1926-SM-4AD63
50-59 years, female
537.1
GTEX-147F4-1426-SM-5LUA8
50-59 years, male
534.1
GTEX-11ZTS-1426-SM-5EQMM
60-69 years, female
532.8
GTEX-ZYY3-0626-SM-5NQ6W
60-69 years, female
531.4
GTEX-WZTO-0626-SM-4PQYY
40-49 years, male
529.0
GTEX-Y5LM-0426-SM-4VBRO
40-49 years, female
528.1
GTEX-ZTPG-1426-SM-51MT3
20-29 years, female
524.4
GTEX-Q734-0326-SM-48U15
40-49 years, female
522.5
GTEX-12WSM-0726-SM-5GCOW
60-69 years, male
520.4
GTEX-13OW6-2626-SM-5IFF2
50-59 years, male
519.2
GTEX-11GSP-0626-SM-5986T
60-69 years, female
514.5
GTEX-ZVT4-0626-SM-5E45T
50-59 years, female
513.4
GTEX-ZVT3-1626-SM-5GU66
60-69 years, female
510.8
GTEX-ZAB4-0826-SM-5LU9D
40-49 years, male
507.2
GTEX-131XE-0326-SM-5LZVO
50-59 years, male
495.1
GTEX-13112-1426-SM-5EGH8
50-59 years, male
493.4
GTEX-QEG4-1826-SM-4R1JN
30-39 years, male
491.3
GTEX-1399T-0826-SM-5IFES
60-69 years, male
489.2
GTEX-13NYB-1026-SM-5IFH3
40-49 years, male
487.9
GTEX-X4EO-1126-SM-4QARQ
60-69 years, female
487.7
GTEX-13VXU-0926-SM-5IFFH
50-59 years, male
486.2
GTEX-11ZUS-2526-SM-59872
30-39 years, male
485.8
GTEX-131XH-0626-SM-5LZWH
50-59 years, male
476.8
GTEX-UTHO-2426-SM-4JBHD
60-69 years, male
472.7
GTEX-YB5E-0326-SM-5IFHU
40-49 years, male
455.7
GTEX-11OF3-0726-SM-5BC4Z
60-69 years, male
433.2
GTEX-12WSG-0626-SM-5FQTQ
50-59 years, female
426.3
GTEX-U3ZN-0226-SM-3DB8D
30-39 years, female
409.3
GTEX-13FTZ-0726-SM-5IFFY
60-69 years, male
399.8
GTEX-13O3O-1826-SM-5IFGW
60-69 years, female
379.4
GTEX-13N11-0926-SM-5IJG2
50-59 years, female
372.4
GTEX-14C38-1526-SM-5RQJ7
50-59 years, male
348.2
GTEX-12WSI-0226-SM-5GCNA
50-59 years, male
338.5
GTEX-12ZZZ-1326-SM-59HKW
60-69 years, male
180.9
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.