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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 800.4
Min RPKM: 265.5
Std RPKM: 99.7
Median RPKM: 441.3
GTEX-1192X-2526-SM-59868
50-59 years, male
800.4
GTEX-WFG8-1626-SM-4LVMB
20-29 years, male
699.0
GTEX-ZC5H-2326-SM-4WAYT
40-49 years, female
670.4
GTEX-ZQUD-0926-SM-57WE3
30-39 years, male
636.1
GTEX-117YX-0326-SM-5GICL
50-59 years, male
607.1
GTEX-Y5LM-1626-SM-4VDTB
40-49 years, female
603.6
GTEX-WFG7-1726-SM-4LVME
20-29 years, male
587.3
GTEX-XMK1-1826-SM-4B66F
40-49 years, male
582.1
GTEX-WRHK-1026-SM-4MVOD
20-29 years, female
581.1
GTEX-VJYA-0926-SM-4KL1N
60-69 years, male
561.6
GTEX-148VJ-2226-SM-5NQ9M
70-79 years, male
554.0
GTEX-11XUK-1426-SM-5EQMG
40-49 years, female
553.4
GTEX-13113-1226-SM-5EGHT
60-69 years, female
548.3
GTEX-ZTPG-2626-SM-57WFX
20-29 years, female
545.3
GTEX-13O61-1326-SM-5KM31
60-69 years, male
545.1
GTEX-ZF2S-1726-SM-57WFT
50-59 years, female
537.4
GTEX-11P82-0826-SM-5P9GU
20-29 years, male
533.8
GTEX-ZLFU-1526-SM-4WWBT
40-49 years, male
532.7
GTEX-145ME-0926-SM-5O9AR
40-49 years, female
532.0
GTEX-X15G-1426-SM-4PQZK
50-59 years, female
522.2
GTEX-ZQG8-2526-SM-57WEQ
60-69 years, female
516.3
GTEX-ZXES-1526-SM-5NQ95
30-39 years, female
508.0
GTEX-111CU-1326-SM-5NQ8L
50-59 years, male
507.7
GTEX-139T6-1026-SM-5IJGC
50-59 years, male
501.6
GTEX-WH7G-1626-SM-4LVMY
40-49 years, male
501.1
GTEX-13111-1426-SM-5DUW3
50-59 years, male
500.0
GTEX-1399U-2126-SM-5IFEZ
50-59 years, female
499.5
GTEX-ZP4G-1626-SM-57WGD
20-29 years, female
499.0
GTEX-WFJO-0926-SM-4LVM2
30-39 years, male
497.4
GTEX-131XG-1726-SM-5LZUR
50-59 years, female
497.1
GTEX-11VI4-1626-SM-5EQKO
40-49 years, female
494.1
GTEX-11NSD-1726-SM-5N9C3
20-29 years, male
488.1
GTEX-13OVI-1926-SM-5IJCG
60-69 years, female
486.4
GTEX-12WSK-1526-SM-5CVNO
40-49 years, female
484.8
GTEX-VUSG-1726-SM-4KKZL
50-59 years, male
480.9
GTEX-Y114-1426-SM-4TT6W
50-59 years, female
476.2
GTEX-WEY5-1526-SM-4LMJF
40-49 years, female
464.4
GTEX-13QBU-1926-SM-5IJEW
40-49 years, female
464.1
GTEX-ZVP2-1726-SM-5GU5P
50-59 years, male
454.6
GTEX-XBED-1426-SM-4AT4G
60-69 years, male
453.2
GTEX-XGQ4-1326-SM-4GIDU
50-59 years, male
448.9
GTEX-1399S-2026-SM-5KM4B
30-39 years, female
447.8
GTEX-UPK5-2026-SM-4JBIM
40-49 years, male
444.7
GTEX-139YR-2226-SM-5IFFW
50-59 years, male
442.1
GTEX-13RTK-0826-SM-5Q5C6
20-29 years, male
440.6
GTEX-14E6E-1626-SM-5RQI7
30-39 years, male
433.8
GTEX-YB5E-1526-SM-5IFIE
40-49 years, male
432.8
GTEX-Y3IK-1726-SM-4YCCR
50-59 years, female
427.2
GTEX-11P7K-1626-SM-5GU63
30-39 years, male
425.9
GTEX-ZYFG-2026-SM-5E43Y
60-69 years, female
421.1
GTEX-11EQ9-1326-SM-5985X
30-39 years, male
419.3
GTEX-ZPIC-2326-SM-57WDW
40-49 years, female
417.3
GTEX-13O21-1026-SM-5IJDU
50-59 years, male
412.3
GTEX-14DAR-1426-SM-5RQIR
50-59 years, male
404.0
GTEX-12BJ1-1926-SM-5HL9Z
60-69 years, male
400.0
GTEX-145LT-1026-SM-5LU9O
40-49 years, male
398.1
GTEX-ZVT2-2126-SM-5NQ93
50-59 years, female
397.1
GTEX-13FH7-1226-SM-5IJFK
50-59 years, female
396.3
GTEX-ZYWO-1526-SM-5SIAL
40-49 years, female
391.7
GTEX-131XF-1326-SM-5GCMQ
60-69 years, male
389.0
GTEX-ZEX8-1826-SM-57WBH
50-59 years, male
385.3
GTEX-11I78-1126-SM-5A5K5
50-59 years, female
384.0
GTEX-ZA64-1226-SM-5HL7B
20-29 years, male
381.9
GTEX-13CF3-1226-SM-5LZXN
60-69 years, female
378.1
GTEX-13D11-0726-SM-5LZZB
50-59 years, female
371.4
GTEX-Z9EW-0926-SM-5CVMM
40-49 years, male
370.9
GTEX-11DXZ-1326-SM-5H11X
50-59 years, male
369.3
GTEX-ZZ64-0526-SM-5GZXM
20-29 years, male
367.4
GTEX-1399R-2026-SM-5K7WN
30-39 years, male
366.8
GTEX-ZTX8-0526-SM-59HLD
20-29 years, male
364.7
GTEX-YEC4-1726-SM-4W21E
40-49 years, male
358.8
GTEX-ZTSS-0926-SM-59865
40-49 years, male
358.6
GTEX-XXEK-1026-SM-4BRUW
50-59 years, male
355.6
GTEX-ZPCL-1726-SM-57WEO
60-69 years, female
349.9
GTEX-11DXX-1626-SM-5H11H
60-69 years, female
346.4
GTEX-ZLV1-1126-SM-4WWBW
60-69 years, female
346.4
GTEX-XAJ8-0526-SM-47JYK
40-49 years, male
345.4
GTEX-XUZC-1426-SM-4BRV3
30-39 years, female
343.3
GTEX-ZVZP-1826-SM-5GZXB
50-59 years, male
342.9
GTEX-13FTW-2026-SM-5IJE2
40-49 years, male
332.4
GTEX-13PL7-2626-SM-5IFH4
60-69 years, female
329.0
GTEX-X5EB-1626-SM-4E3IV
40-49 years, male
328.9
GTEX-1122O-1326-SM-5H11F
60-69 years, female
320.6
GTEX-Y9LG-1626-SM-5IFHM
30-39 years, male
304.6
GTEX-133LE-1426-SM-5IFH1
20-29 years, female
295.0
GTEX-111YS-1426-SM-5GID8
60-69 years, male
281.7
GTEX-WQUQ-2426-SM-4MVNW
60-69 years, male
271.1
GTEX-YF7O-1826-SM-5IFIU
50-59 years, male
265.5
Show all
SMALL INTESTINE - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.