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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 336.9
Min RPKM: 55.2
Std RPKM: 53.5
Median RPKM: 147.1
GTEX-ZC5H-2326-SM-4WAYT
40-49 years, female
336.9
GTEX-VUSG-1726-SM-4KKZL
50-59 years, male
293.3
GTEX-148VJ-2226-SM-5NQ9M
70-79 years, male
285.5
GTEX-UPK5-2026-SM-4JBIM
40-49 years, male
281.3
GTEX-11VI4-1626-SM-5EQKO
40-49 years, female
259.5
GTEX-13O61-1326-SM-5KM31
60-69 years, male
255.5
GTEX-11XUK-1426-SM-5EQMG
40-49 years, female
234.7
GTEX-WFJO-0926-SM-4LVM2
30-39 years, male
234.5
GTEX-WH7G-1626-SM-4LVMY
40-49 years, male
233.6
GTEX-11NSD-1726-SM-5N9C3
20-29 years, male
228.7
GTEX-X15G-1426-SM-4PQZK
50-59 years, female
227.0
GTEX-12BJ1-1926-SM-5HL9Z
60-69 years, male
226.7
GTEX-13FH7-1226-SM-5IJFK
50-59 years, female
224.2
GTEX-WRHK-1026-SM-4MVOD
20-29 years, female
223.0
GTEX-11P82-0826-SM-5P9GU
20-29 years, male
219.8
GTEX-13QBU-1926-SM-5IJEW
40-49 years, female
219.5
GTEX-1399U-2126-SM-5IFEZ
50-59 years, female
210.8
GTEX-ZLFU-1526-SM-4WWBT
40-49 years, male
210.7
GTEX-Z9EW-0926-SM-5CVMM
40-49 years, male
191.6
GTEX-131XG-1726-SM-5LZUR
50-59 years, female
191.2
GTEX-ZEX8-1826-SM-57WBH
50-59 years, male
184.8
GTEX-ZVP2-1726-SM-5GU5P
50-59 years, male
182.9
GTEX-WQUQ-2426-SM-4MVNW
60-69 years, male
180.0
GTEX-14E6E-1626-SM-5RQI7
30-39 years, male
178.4
GTEX-11P7K-1626-SM-5GU63
30-39 years, male
177.4
GTEX-11DXZ-1326-SM-5H11X
50-59 years, male
172.2
GTEX-13CF3-1226-SM-5LZXN
60-69 years, female
171.3
GTEX-133LE-1426-SM-5IFH1
20-29 years, female
171.0
GTEX-13111-1426-SM-5DUW3
50-59 years, male
168.8
GTEX-145ME-0926-SM-5O9AR
40-49 years, female
168.2
GTEX-11DXX-1626-SM-5H11H
60-69 years, female
167.4
GTEX-13OVI-1926-SM-5IJCG
60-69 years, female
166.5
GTEX-1399S-2026-SM-5KM4B
30-39 years, female
162.8
GTEX-YF7O-1826-SM-5IFIU
50-59 years, male
162.1
GTEX-XAJ8-0526-SM-47JYK
40-49 years, male
161.7
GTEX-11I78-1126-SM-5A5K5
50-59 years, female
160.9
GTEX-11EQ9-1326-SM-5985X
30-39 years, male
160.8
GTEX-XBED-1426-SM-4AT4G
60-69 years, male
157.8
GTEX-131XF-1326-SM-5GCMQ
60-69 years, male
155.9
GTEX-13113-1226-SM-5EGHT
60-69 years, female
151.1
GTEX-VJYA-0926-SM-4KL1N
60-69 years, male
150.7
GTEX-ZYWO-1526-SM-5SIAL
40-49 years, female
148.7
GTEX-Y114-1426-SM-4TT6W
50-59 years, female
148.6
GTEX-ZP4G-1626-SM-57WGD
20-29 years, female
147.8
GTEX-12WSK-1526-SM-5CVNO
40-49 years, female
146.5
GTEX-ZQG8-2526-SM-57WEQ
60-69 years, female
146.3
GTEX-ZTSS-0926-SM-59865
40-49 years, male
144.9
GTEX-Y9LG-1626-SM-5IFHM
30-39 years, male
144.6
GTEX-ZVT2-2126-SM-5NQ93
50-59 years, female
144.2
GTEX-WEY5-1526-SM-4LMJF
40-49 years, female
144.0
GTEX-1192X-2526-SM-59868
50-59 years, male
143.4
GTEX-13RTK-0826-SM-5Q5C6
20-29 years, male
142.0
GTEX-YB5E-1526-SM-5IFIE
40-49 years, male
140.4
GTEX-13O21-1026-SM-5IJDU
50-59 years, male
140.0
GTEX-XUZC-1426-SM-4BRV3
30-39 years, female
138.5
GTEX-ZZ64-0526-SM-5GZXM
20-29 years, male
136.8
GTEX-1399R-2026-SM-5K7WN
30-39 years, male
135.7
GTEX-XGQ4-1326-SM-4GIDU
50-59 years, male
134.7
GTEX-XMK1-1826-SM-4B66F
40-49 years, male
134.1
GTEX-ZXES-1526-SM-5NQ95
30-39 years, female
134.1
GTEX-139T6-1026-SM-5IJGC
50-59 years, male
132.2
GTEX-ZQUD-0926-SM-57WE3
30-39 years, male
130.6
GTEX-ZVZP-1826-SM-5GZXB
50-59 years, male
130.6
GTEX-ZTPG-2626-SM-57WFX
20-29 years, female
129.0
GTEX-1122O-1326-SM-5H11F
60-69 years, female
125.4
GTEX-XXEK-1026-SM-4BRUW
50-59 years, male
125.3
GTEX-ZF2S-1726-SM-57WFT
50-59 years, female
123.7
GTEX-145LT-1026-SM-5LU9O
40-49 years, male
122.4
GTEX-117YX-0326-SM-5GICL
50-59 years, male
121.3
GTEX-14DAR-1426-SM-5RQIR
50-59 years, male
118.3
GTEX-ZYFG-2026-SM-5E43Y
60-69 years, female
116.0
GTEX-13PL7-2626-SM-5IFH4
60-69 years, female
115.2
GTEX-ZTX8-0526-SM-59HLD
20-29 years, male
113.8
GTEX-139YR-2226-SM-5IFFW
50-59 years, male
107.8
GTEX-111YS-1426-SM-5GID8
60-69 years, male
107.2
GTEX-ZLV1-1126-SM-4WWBW
60-69 years, female
106.8
GTEX-ZPIC-2326-SM-57WDW
40-49 years, female
103.0
GTEX-WFG7-1726-SM-4LVME
20-29 years, male
102.5
GTEX-ZA64-1226-SM-5HL7B
20-29 years, male
99.8
GTEX-ZPCL-1726-SM-57WEO
60-69 years, female
95.0
GTEX-YEC4-1726-SM-4W21E
40-49 years, male
93.4
GTEX-13D11-0726-SM-5LZZB
50-59 years, female
91.5
GTEX-Y3IK-1726-SM-4YCCR
50-59 years, female
85.6
GTEX-WFG8-1626-SM-4LVMB
20-29 years, male
83.3
GTEX-13FTW-2026-SM-5IJE2
40-49 years, male
82.1
GTEX-X5EB-1626-SM-4E3IV
40-49 years, male
80.1
GTEX-111CU-1326-SM-5NQ8L
50-59 years, male
75.7
GTEX-Y5LM-1626-SM-4VDTB
40-49 years, female
55.2
Show all
SMALL INTESTINE - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.