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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 1079.0
Min RPKM: 341.9
Std RPKM: 161.7
Median RPKM: 591.2
GTEX-Y8LW-1426-SM-5RQJJ
50-59 years, female
1079.0
GTEX-ZVT3-2726-SM-5GU5X
60-69 years, female
1059.8
GTEX-1117F-2526-SM-5GZY6
60-69 years, female
1022.9
GTEX-11TTK-2726-SM-5GU58
60-69 years, female
975.7
GTEX-12ZZX-1926-SM-5EGKC
40-49 years, female
941.2
GTEX-ZE7O-2426-SM-57WD7
50-59 years, female
911.8
GTEX-TSE9-2526-SM-4DXUS
60-69 years, female
887.6
GTEX-NL3G-2526-SM-4SOIE
60-69 years, female
874.7
GTEX-ZAJG-2926-SM-5HL8P
50-59 years, female
872.2
GTEX-ZTPG-2226-SM-57WF9
20-29 years, female
850.6
GTEX-13QIC-1826-SM-5J1MY
60-69 years, female
841.8
GTEX-ZYY3-2626-SM-5N9DH
60-69 years, female
805.6
GTEX-PLZ4-2726-SM-3P61A
50-59 years, female
774.9
GTEX-RWS6-1726-SM-47JXP
60-69 years, female
773.7
GTEX-WRHU-2926-SM-4MVNQ
50-59 years, female
763.5
GTEX-11P81-2126-SM-5HL6N
30-39 years, female
751.5
GTEX-QDT8-2526-SM-48TYX
30-39 years, female
751.4
GTEX-14DAQ-2326-SM-5S2QX
60-69 years, female
748.0
GTEX-13D11-1326-SM-5IJFY
50-59 years, female
747.4
GTEX-SE5C-1126-SM-4BRWZ
40-49 years, female
740.8
GTEX-13U4I-2026-SM-5LU3L
40-49 years, female
734.8
GTEX-131XG-2126-SM-5DUXG
50-59 years, female
731.4
GTEX-S7SF-1426-SM-4AT5A
20-29 years, female
724.9
GTEX-S4UY-1326-SM-4AD4X
40-49 years, female
717.3
GTEX-X8HC-2826-SM-46MWJ
50-59 years, female
712.6
GTEX-11GSP-2226-SM-5HL5Q
60-69 years, female
709.5
GTEX-S4P3-1126-SM-4AD52
50-59 years, female
709.0
GTEX-TMMY-1926-SM-4DXUU
40-49 years, female
692.5
GTEX-14A5I-2726-SM-5SIB3
50-59 years, female
689.7
GTEX-T2IS-1926-SM-4DM74
20-29 years, female
668.6
GTEX-T6MO-1226-SM-4DM5S
40-49 years, female
667.6
GTEX-Q734-1426-SM-48TZQ
40-49 years, female
664.1
GTEX-ZYVF-0326-SM-5GIES
50-59 years, female
657.2
GTEX-PWOO-2026-SM-48TDE
40-49 years, female
650.6
GTEX-YFC4-2926-SM-5IFJ8
40-49 years, female
640.2
GTEX-131YS-2426-SM-5J2OD
60-69 years, female
637.4
GTEX-147F3-1526-SM-5SIAK
50-59 years, female
635.0
GTEX-113JC-1926-SM-5N9GE
50-59 years, female
632.4
GTEX-14BMU-1926-SM-5S2QC
20-29 years, female
630.1
GTEX-P78B-2226-SM-3P5ZZ
40-49 years, female
629.1
GTEX-ZC5H-2226-SM-4WAWS
40-49 years, female
626.1
GTEX-12WSB-2426-SM-5EGJC
60-69 years, female
617.3
GTEX-146FR-2426-SM-5NQAU
60-69 years, female
608.6
GTEX-ZYWO-2026-SM-5GIDA
40-49 years, female
601.1
GTEX-ZQG8-1126-SM-51MRL
60-69 years, female
600.4
GTEX-11EMC-1926-SM-5A5JU
60-69 years, female
595.0
GTEX-UPIC-1426-SM-4IHLQ
20-29 years, female
594.9
GTEX-132AR-1626-SM-5EGHP
50-59 years, female
592.2
GTEX-146FH-2626-SM-5Q5E1
50-59 years, female
590.3
GTEX-1399U-1526-SM-5J2N7
50-59 years, female
582.8
GTEX-OHPK-2526-SM-3MJH9
50-59 years, female
582.3
GTEX-W5WG-1026-SM-4LMIF
50-59 years, female
575.4
GTEX-WEY5-0826-SM-4LMIH
40-49 years, female
575.4
GTEX-ZV6S-1326-SM-59HJA
40-49 years, female
573.9
GTEX-N7MT-1926-SM-3LK5N
60-69 years, female
567.8
GTEX-P4PP-2526-SM-3P61P
30-39 years, female
566.4
GTEX-PX3G-2526-SM-48TZV
20-29 years, female
562.2
GTEX-13PL7-2726-SM-5L3GB
60-69 years, female
561.6
GTEX-13PVR-1426-SM-5S2PW
60-69 years, female
558.2
GTEX-13OVI-0926-SM-5J1MI
60-69 years, female
558.1
GTEX-XV7Q-1626-SM-4BRWC
40-49 years, female
551.0
GTEX-X15G-1926-SM-4PQZQ
50-59 years, female
547.8
GTEX-11DXX-1726-SM-5H11T
60-69 years, female
538.9
GTEX-XUJ4-1626-SM-4BONV
60-69 years, female
536.0
GTEX-PWN1-2526-SM-48TDS
40-49 years, female
534.5
GTEX-PWCY-1726-SM-48TD3
20-29 years, female
530.4
GTEX-YJ8O-1226-SM-5P9JE
40-49 years, female
520.6
GTEX-145ME-1426-SM-5RQJS
40-49 years, female
518.4
GTEX-12WSD-2926-SM-5LZUH
60-69 years, female
517.6
GTEX-13W3W-2326-SM-5LU4Y
60-69 years, female
510.9
GTEX-TML8-1126-SM-4DXSS
40-49 years, female
508.3
GTEX-1399S-2326-SM-5K7YV
30-39 years, female
503.0
GTEX-13QBU-1726-SM-5IJFQ
40-49 years, female
500.3
GTEX-XUW1-0326-SM-4BOOR
50-59 years, female
500.1
GTEX-QVJO-2526-SM-4R1KB
60-69 years, female
494.4
GTEX-U3ZN-0926-SM-4DXTU
30-39 years, female
487.8
GTEX-ZZPU-2226-SM-5EGIV
50-59 years, female
486.3
GTEX-ZLWG-1126-SM-4WWFQ
50-59 years, female
477.9
GTEX-11I78-2026-SM-5987C
50-59 years, female
465.6
GTEX-ZP4G-0826-SM-4WWF3
20-29 years, female
459.1
GTEX-14AS3-1726-SM-5RQJV
40-49 years, female
455.2
GTEX-11EM3-1826-SM-5A5KO
20-29 years, female
453.6
GTEX-13N11-1526-SM-5L3FL
50-59 years, female
437.4
GTEX-UJHI-1326-SM-4IHJO
50-59 years, female
435.4
GTEX-RU1J-1426-SM-46MUV
20-29 years, female
427.2
GTEX-Y114-1926-SM-4TT8J
50-59 years, female
426.3
GTEX-QCQG-1226-SM-48U23
50-59 years, female
420.9
GTEX-ZXES-0626-SM-5E45P
30-39 years, female
407.4
GTEX-11XUK-1326-SM-5EQM4
40-49 years, female
393.4
GTEX-12WSJ-1326-SM-5GCOB
40-49 years, female
388.5
GTEX-OHPL-2526-SM-3MJGT
60-69 years, female
388.3
GTEX-S341-1226-SM-4AD5S
40-49 years, female
387.8
GTEX-Y3IK-2226-SM-4YCD4
50-59 years, female
372.9
GTEX-ZGAY-2226-SM-4YCCX
40-49 years, female
372.9
GTEX-11VI4-0726-SM-5GU5B
40-49 years, female
355.8
GTEX-ZVT2-0626-SM-5GICR
50-59 years, female
341.9
Show all
VAGINA - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.