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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 1057.7
Min RPKM: 163.7
Std RPKM: 172.8
Median RPKM: 369.9
GTEX-WRHK-1026-SM-4MVOD
20-29 years, female
1057.7
GTEX-ZC5H-2326-SM-4WAYT
40-49 years, female
811.9
GTEX-VUSG-1726-SM-4KKZL
50-59 years, male
797.6
GTEX-WH7G-1626-SM-4LVMY
40-49 years, male
797.3
GTEX-148VJ-2226-SM-5NQ9M
70-79 years, male
754.8
GTEX-X15G-1426-SM-4PQZK
50-59 years, female
717.6
GTEX-WFJO-0926-SM-4LVM2
30-39 years, male
706.2
GTEX-11NSD-1726-SM-5N9C3
20-29 years, male
693.6
GTEX-UPK5-2026-SM-4JBIM
40-49 years, male
690.0
GTEX-1399U-2126-SM-5IFEZ
50-59 years, female
652.1
GTEX-Y5LM-1626-SM-4VDTB
40-49 years, female
635.8
GTEX-11VI4-1626-SM-5EQKO
40-49 years, female
629.3
GTEX-131XG-1726-SM-5LZUR
50-59 years, female
620.8
GTEX-13FH7-1226-SM-5IJFK
50-59 years, female
616.8
GTEX-1192X-2526-SM-59868
50-59 years, male
616.0
GTEX-ZLFU-1526-SM-4WWBT
40-49 years, male
610.6
GTEX-13O61-1326-SM-5KM31
60-69 years, male
604.8
GTEX-14E6E-1626-SM-5RQI7
30-39 years, male
583.2
GTEX-145ME-0926-SM-5O9AR
40-49 years, female
538.3
GTEX-ZVP2-1726-SM-5GU5P
50-59 years, male
535.7
GTEX-11XUK-1426-SM-5EQMG
40-49 years, female
532.0
GTEX-13RTK-0826-SM-5Q5C6
20-29 years, male
524.3
GTEX-11P82-0826-SM-5P9GU
20-29 years, male
504.9
GTEX-ZEX8-1826-SM-57WBH
50-59 years, male
500.0
GTEX-Z9EW-0926-SM-5CVMM
40-49 years, male
495.1
GTEX-13QBU-1926-SM-5IJEW
40-49 years, female
486.5
GTEX-ZTPG-2626-SM-57WFX
20-29 years, female
479.8
GTEX-VJYA-0926-SM-4KL1N
60-69 years, male
461.8
GTEX-13111-1426-SM-5DUW3
50-59 years, male
459.6
GTEX-WEY5-1526-SM-4LMJF
40-49 years, female
454.6
GTEX-117YX-0326-SM-5GICL
50-59 years, male
451.7
GTEX-ZYWO-1526-SM-5SIAL
40-49 years, female
444.0
GTEX-X5EB-1626-SM-4E3IV
40-49 years, male
429.9
GTEX-139T6-1026-SM-5IJGC
50-59 years, male
427.1
GTEX-XMK1-1826-SM-4B66F
40-49 years, male
418.5
GTEX-ZQG8-2526-SM-57WEQ
60-69 years, female
407.9
GTEX-139YR-2226-SM-5IFFW
50-59 years, male
403.7
GTEX-XAJ8-0526-SM-47JYK
40-49 years, male
401.4
GTEX-13OVI-1926-SM-5IJCG
60-69 years, female
401.1
GTEX-WFG7-1726-SM-4LVME
20-29 years, male
393.4
GTEX-13113-1226-SM-5EGHT
60-69 years, female
388.7
GTEX-1399R-2026-SM-5K7WN
30-39 years, male
386.6
GTEX-13CF3-1226-SM-5LZXN
60-69 years, female
385.5
GTEX-XGQ4-1326-SM-4GIDU
50-59 years, male
370.2
GTEX-ZQUD-0926-SM-57WE3
30-39 years, male
369.7
GTEX-ZZ64-0526-SM-5GZXM
20-29 years, male
369.2
GTEX-1399S-2026-SM-5KM4B
30-39 years, female
364.8
GTEX-11I78-1126-SM-5A5K5
50-59 years, female
361.8
GTEX-11P7K-1626-SM-5GU63
30-39 years, male
360.7
GTEX-WQUQ-2426-SM-4MVNW
60-69 years, male
359.9
GTEX-12BJ1-1926-SM-5HL9Z
60-69 years, male
357.4
GTEX-Y3IK-1726-SM-4YCCR
50-59 years, female
354.5
GTEX-XBED-1426-SM-4AT4G
60-69 years, male
346.6
GTEX-ZP4G-1626-SM-57WGD
20-29 years, female
344.3
GTEX-111CU-1326-SM-5NQ8L
50-59 years, male
339.1
GTEX-12WSK-1526-SM-5CVNO
40-49 years, female
336.8
GTEX-ZF2S-1726-SM-57WFT
50-59 years, female
329.9
GTEX-11DXZ-1326-SM-5H11X
50-59 years, male
325.8
GTEX-11DXX-1626-SM-5H11H
60-69 years, female
320.7
GTEX-WFG8-1626-SM-4LVMB
20-29 years, male
320.1
GTEX-XUZC-1426-SM-4BRV3
30-39 years, female
318.4
GTEX-ZPIC-2326-SM-57WDW
40-49 years, female
316.2
GTEX-XXEK-1026-SM-4BRUW
50-59 years, male
312.6
GTEX-ZA64-1226-SM-5HL7B
20-29 years, male
309.6
GTEX-13O21-1026-SM-5IJDU
50-59 years, male
303.7
GTEX-11EQ9-1326-SM-5985X
30-39 years, male
301.9
GTEX-ZVT2-2126-SM-5NQ93
50-59 years, female
301.5
GTEX-145LT-1026-SM-5LU9O
40-49 years, male
300.4
GTEX-ZYFG-2026-SM-5E43Y
60-69 years, female
298.4
GTEX-133LE-1426-SM-5IFH1
20-29 years, female
291.1
GTEX-ZXES-1526-SM-5NQ95
30-39 years, female
290.6
GTEX-131XF-1326-SM-5GCMQ
60-69 years, male
289.7
GTEX-Y114-1426-SM-4TT6W
50-59 years, female
279.7
GTEX-YEC4-1726-SM-4W21E
40-49 years, male
277.8
GTEX-ZLV1-1126-SM-4WWBW
60-69 years, female
259.6
GTEX-YB5E-1526-SM-5IFIE
40-49 years, male
252.5
GTEX-14DAR-1426-SM-5RQIR
50-59 years, male
250.5
GTEX-ZTX8-0526-SM-59HLD
20-29 years, male
243.6
GTEX-13PL7-2626-SM-5IFH4
60-69 years, female
229.8
GTEX-YF7O-1826-SM-5IFIU
50-59 years, male
227.7
GTEX-13D11-0726-SM-5LZZB
50-59 years, female
226.8
GTEX-ZVZP-1826-SM-5GZXB
50-59 years, male
201.8
GTEX-Y9LG-1626-SM-5IFHM
30-39 years, male
201.4
GTEX-1122O-1326-SM-5H11F
60-69 years, female
196.0
GTEX-ZPCL-1726-SM-57WEO
60-69 years, female
187.8
GTEX-13FTW-2026-SM-5IJE2
40-49 years, male
183.3
GTEX-ZTSS-0926-SM-59865
40-49 years, male
167.1
GTEX-111YS-1426-SM-5GID8
60-69 years, male
163.7
Show all
SMALL INTESTINE - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.