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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 381.5
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 123.6
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 226.3
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 373.7
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 367.7
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 578.1
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 334.2
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 448.7
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 507.1
Min RPKM: 70.6
Std RPKM: 73.1
Median RPKM: 211.8
GTEX-REY6-1226-SM-48FDR
60-69 years, male
507.1
GTEX-ZTPG-1426-SM-51MT3
20-29 years, female
440.5
GTEX-S32W-1926-SM-4AD63
50-59 years, female
377.8
GTEX-UTHO-2426-SM-4JBHD
60-69 years, male
366.8
GTEX-13NYB-1026-SM-5IFH3
40-49 years, male
362.5
GTEX-12696-0826-SM-5EGGE
60-69 years, male
347.5
GTEX-RN64-1826-SM-48FDV
50-59 years, male
336.9
GTEX-139TS-1426-SM-5IFJD
60-69 years, male
328.9
GTEX-QEG4-1826-SM-4R1JN
30-39 years, male
321.8
GTEX-X4XY-1626-SM-46MVN
60-69 years, male
321.3
GTEX-14C38-1526-SM-5RQJ7
50-59 years, male
316.7
GTEX-13N11-0926-SM-5IJG2
50-59 years, female
312.7
GTEX-14A5I-1726-SM-5QGQ5
50-59 years, female
309.8
GTEX-UPIC-0926-SM-4IHLV
20-29 years, female
306.1
GTEX-X4EO-1126-SM-4QARQ
60-69 years, female
302.6
GTEX-1497J-0726-SM-5Q5D1
60-69 years, male
299.4
GTEX-RTLS-1326-SM-46MUN
60-69 years, female
299.4
GTEX-QDVN-0826-SM-48TZ2
50-59 years, male
297.0
GTEX-131XE-0326-SM-5LZVO
50-59 years, male
290.3
GTEX-YFC4-1526-SM-5IFJS
40-49 years, female
288.0
GTEX-13NZ9-1326-SM-5MR3V
50-59 years, male
287.4
GTEX-147F4-1426-SM-5LUA8
50-59 years, male
282.8
GTEX-12WSI-0226-SM-5GCNA
50-59 years, male
279.4
GTEX-11ZUS-2526-SM-59872
30-39 years, male
277.9
GTEX-13N2G-0926-SM-5IFGJ
60-69 years, male
276.4
GTEX-145MF-0826-SM-5QGQA
50-59 years, male
276.3
GTEX-X261-1726-SM-4PQYT
50-59 years, male
274.4
GTEX-YB5E-0326-SM-5IFHU
40-49 years, male
272.4
GTEX-RNOR-1426-SM-48FDJ
50-59 years, female
272.0
GTEX-131YS-1626-SM-5HL6C
60-69 years, female
270.7
GTEX-QESD-2026-SM-447BI
20-29 years, male
266.3
GTEX-SJXC-1226-SM-4DM78
60-69 years, male
265.3
GTEX-X4EP-1026-SM-4QAS5
60-69 years, female
265.3
GTEX-11DXY-0526-SM-5EGGQ
60-69 years, male
256.4
GTEX-11NUK-1226-SM-5P9GM
50-59 years, male
256.1
GTEX-132NY-0926-SM-5P9G3
60-69 years, male
248.9
GTEX-ZAB4-0826-SM-5LU9D
40-49 years, male
248.9
GTEX-131XH-0626-SM-5LZWH
50-59 years, male
248.2
GTEX-ZVT3-1626-SM-5GU66
60-69 years, female
248.0
GTEX-QEL4-1226-SM-447A4
50-59 years, male
247.9
GTEX-Q2AG-1126-SM-48U1P
40-49 years, female
238.5
GTEX-RWSA-1426-SM-47JXA
40-49 years, male
238.1
GTEX-13O3O-1826-SM-5IFGW
60-69 years, female
237.4
GTEX-S33H-1626-SM-4AD68
30-39 years, male
236.0
GTEX-RU72-1426-SM-46MUF
50-59 years, female
235.7
GTEX-13QJC-0726-SM-5RQJK
60-69 years, female
234.2
GTEX-1269C-0626-SM-5FQSS
60-69 years, female
232.9
GTEX-WZTO-0626-SM-4PQYY
40-49 years, male
232.2
GTEX-145LU-1326-SM-5LU9N
50-59 years, male
230.3
GTEX-12KS4-1326-SM-5LUB3
30-39 years, male
229.2
GTEX-ZVP2-0626-SM-51MSO
50-59 years, male
225.4
GTEX-13FLV-0326-SM-5N9DJ
50-59 years, male
223.9
GTEX-13112-1426-SM-5EGH8
50-59 years, male
221.6
GTEX-YECK-1926-SM-4W21H
60-69 years, male
218.3
GTEX-VUSG-0126-SM-4KL1X
50-59 years, male
217.9
GTEX-14DAQ-1726-SM-5S2R2
60-69 years, female
216.1
GTEX-Y5V5-0926-SM-4VBPZ
60-69 years, female
214.5
GTEX-11NV4-1326-SM-5HL6V
60-69 years, male
213.6
GTEX-XBEC-1526-SM-4AT68
50-59 years, male
212.9
GTEX-146FH-1526-SM-5NQBU
50-59 years, female
211.8
GTEX-13PVR-0126-SM-5S2PY
60-69 years, female
211.3
GTEX-Y5LM-0426-SM-4VBRO
40-49 years, female
209.7
GTEX-139TU-0826-SM-5IJFG
60-69 years, male
209.2
GTEX-ZYY3-0626-SM-5NQ6W
60-69 years, female
209.1
GTEX-12WSM-0726-SM-5GCOW
60-69 years, male
208.9
GTEX-147JS-1126-SM-5RQIW
60-69 years, male
207.9
GTEX-WQUQ-1926-SM-4OOSA
60-69 years, male
205.5
GTEX-12WSG-0626-SM-5FQTQ
50-59 years, female
205.3
GTEX-13OW6-2626-SM-5IFF2
50-59 years, male
204.4
GTEX-T6MN-1226-SM-3NMA5
50-59 years, male
202.5
GTEX-13VXU-0926-SM-5IFFH
50-59 years, male
202.2
GTEX-ZVT4-0626-SM-5E45T
50-59 years, female
200.6
GTEX-WFON-1726-SM-4LVMQ
40-49 years, male
197.8
GTEX-11WQC-0726-SM-5EQMR
60-69 years, male
195.2
GTEX-WYVS-1926-SM-4PQZ2
40-49 years, female
192.4
GTEX-13SLX-1226-SM-5S2Q6
50-59 years, female
192.3
GTEX-ZYT6-0626-SM-5E45V
30-39 years, male
192.2
GTEX-11ZTS-1426-SM-5EQMM
60-69 years, female
191.2
GTEX-13FTZ-0726-SM-5IFFY
60-69 years, male
190.8
GTEX-P78B-1326-SM-3P611
40-49 years, female
189.3
GTEX-XOTO-0826-SM-4B65O
50-59 years, male
186.4
GTEX-Q734-0326-SM-48U15
40-49 years, female
181.3
GTEX-S4Z8-0526-SM-4AD4T
60-69 years, male
179.1
GTEX-11ZVC-0726-SM-5FQT9
50-59 years, female
178.2
GTEX-11OF3-0726-SM-5BC4Z
60-69 years, male
177.1
GTEX-12WSL-0226-SM-5CVMJ
50-59 years, male
175.5
GTEX-1212Z-0226-SM-59HLF
60-69 years, male
174.2
GTEX-YEC4-0826-SM-5P9FV
40-49 years, male
169.2
GTEX-13NZB-0626-SM-5IFH6
30-39 years, male
169.1
GTEX-139YR-0226-SM-5IFEM
50-59 years, male
168.5
GTEX-ZZPU-0426-SM-5GZYH
50-59 years, female
166.2
GTEX-11GSP-0626-SM-5986T
60-69 years, female
164.3
GTEX-R53T-0326-SM-48FEC
50-59 years, female
161.1
GTEX-TKQ2-1726-SM-4DXUP
50-59 years, male
158.4
GTEX-14E1K-0326-SM-5S2PE
50-59 years, male
157.5
GTEX-145MO-2326-SM-5NQ9K
60-69 years, male
157.4
GTEX-14753-1626-SM-5NQ9L
60-69 years, male
156.3
GTEX-ZF29-2026-SM-4WWB7
60-69 years, female
156.2
GTEX-12WSD-1426-SM-5GCN9
60-69 years, female
155.9
GTEX-11EQ9-0526-SM-5A5JZ
30-39 years, male
153.2
GTEX-13FTW-1126-SM-5J2NV
40-49 years, male
151.8
GTEX-PX3G-0826-SM-48TZS
20-29 years, female
151.8
GTEX-1399T-0826-SM-5IFES
60-69 years, male
150.0
GTEX-RM2N-1926-SM-48FCU
50-59 years, male
145.1
GTEX-13113-1326-SM-5GCOI
60-69 years, female
138.6
GTEX-144GM-1326-SM-5LU5E
20-29 years, male
136.1
GTEX-14AS3-0126-SM-5Q5F4
40-49 years, female
134.6
GTEX-X3Y1-2726-SM-4PQZH
40-49 years, male
128.0
GTEX-UPK5-1426-SM-4JBHH
40-49 years, male
127.7
GTEX-12ZZZ-1326-SM-59HKW
60-69 years, male
126.5
GTEX-Z9EW-0426-SM-5CVM9
40-49 years, male
121.0
GTEX-ZF2S-3026-SM-4WWCH
50-59 years, female
115.1
GTEX-OOBJ-0826-SM-3NB2K
60-69 years, male
111.4
GTEX-ZAB5-0426-SM-5CVMI
50-59 years, male
108.1
GTEX-1399R-1226-SM-5P9GF
30-39 years, male
107.2
GTEX-QV44-0326-SM-4R1KD
50-59 years, male
105.1
GTEX-11DXZ-0126-SM-5EGGY
50-59 years, male
103.3
GTEX-ZPU1-0826-SM-57WG2
40-49 years, male
75.1
GTEX-U3ZN-0226-SM-3DB8D
30-39 years, female
70.6
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.