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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 2393.9
Min RPKM: 3.3
Std RPKM: 534.8
Median RPKM: 640.4
GTEX-111YS-1426-SM-5GID8
60-69 years, male
2393.9
GTEX-13D11-0726-SM-5LZZB
50-59 years, female
2086.5
GTEX-XBED-1426-SM-4AT4G
60-69 years, male
1711.3
GTEX-YEC4-1726-SM-4W21E
40-49 years, male
1700.7
GTEX-ZTX8-0526-SM-59HLD
20-29 years, male
1551.0
GTEX-YB5E-1526-SM-5IFIE
40-49 years, male
1542.2
GTEX-14DAR-1426-SM-5RQIR
50-59 years, male
1444.2
GTEX-ZXES-1526-SM-5NQ95
30-39 years, female
1412.1
GTEX-ZYFG-2026-SM-5E43Y
60-69 years, female
1398.2
GTEX-ZVZP-1826-SM-5GZXB
50-59 years, male
1395.3
GTEX-13PL7-2626-SM-5IFH4
60-69 years, female
1385.4
GTEX-ZTSS-0926-SM-59865
40-49 years, male
1344.0
GTEX-13FTW-2026-SM-5IJE2
40-49 years, male
1266.7
GTEX-ZPCL-1726-SM-57WEO
60-69 years, female
1251.5
GTEX-1122O-1326-SM-5H11F
60-69 years, female
1242.3
GTEX-ZLV1-1126-SM-4WWBW
60-69 years, female
1201.7
GTEX-11DXX-1626-SM-5H11H
60-69 years, female
1165.2
GTEX-YF7O-1826-SM-5IFIU
50-59 years, male
1115.9
GTEX-11EQ9-1326-SM-5985X
30-39 years, male
1107.7
GTEX-145LT-1026-SM-5LU9O
40-49 years, male
1096.2
GTEX-Y9LG-1626-SM-5IFHM
30-39 years, male
1078.8
GTEX-11P7K-1626-SM-5GU63
30-39 years, male
1059.7
GTEX-X5EB-1626-SM-4E3IV
40-49 years, male
1008.3
GTEX-131XF-1326-SM-5GCMQ
60-69 years, male
977.1
GTEX-XXEK-1026-SM-4BRUW
50-59 years, male
970.0
GTEX-ZA64-1226-SM-5HL7B
20-29 years, male
951.5
GTEX-ZZ64-0526-SM-5GZXM
20-29 years, male
932.6
GTEX-ZYWO-1526-SM-5SIAL
40-49 years, female
925.6
GTEX-XUZC-1426-SM-4BRV3
30-39 years, female
919.5
GTEX-11I78-1126-SM-5A5K5
50-59 years, female
901.8
GTEX-XGQ4-1326-SM-4GIDU
50-59 years, male
899.3
GTEX-WQUQ-2426-SM-4MVNW
60-69 years, male
835.0
GTEX-ZTPG-2626-SM-57WFX
20-29 years, female
828.1
GTEX-13113-1226-SM-5EGHT
60-69 years, female
809.7
GTEX-13CF3-1226-SM-5LZXN
60-69 years, female
797.6
GTEX-14E6E-1626-SM-5RQI7
30-39 years, male
782.9
GTEX-ZVT2-2126-SM-5NQ93
50-59 years, female
760.3
GTEX-139YR-2226-SM-5IFFW
50-59 years, male
739.9
GTEX-1399R-2026-SM-5K7WN
30-39 years, male
709.6
GTEX-11DXZ-1326-SM-5H11X
50-59 years, male
704.0
GTEX-133LE-1426-SM-5IFH1
20-29 years, female
675.2
GTEX-ZPIC-2326-SM-57WDW
40-49 years, female
671.1
GTEX-VJYA-0926-SM-4KL1N
60-69 years, male
663.0
GTEX-139T6-1026-SM-5IJGC
50-59 years, male
640.6
GTEX-XAJ8-0526-SM-47JYK
40-49 years, male
640.2
GTEX-WFJO-0926-SM-4LVM2
30-39 years, male
624.0
GTEX-1399S-2026-SM-5KM4B
30-39 years, female
613.6
GTEX-WFG7-1726-SM-4LVME
20-29 years, male
599.6
GTEX-ZVP2-1726-SM-5GU5P
50-59 years, male
589.9
GTEX-ZEX8-1826-SM-57WBH
50-59 years, male
552.3
GTEX-13O61-1326-SM-5KM31
60-69 years, male
488.3
GTEX-11XUK-1426-SM-5EQMG
40-49 years, female
480.1
GTEX-11P82-0826-SM-5P9GU
20-29 years, male
479.5
GTEX-13FH7-1226-SM-5IJFK
50-59 years, female
477.1
GTEX-12BJ1-1926-SM-5HL9Z
60-69 years, male
403.2
GTEX-ZLFU-1526-SM-4WWBT
40-49 years, male
400.4
GTEX-11NSD-1726-SM-5N9C3
20-29 years, male
396.7
GTEX-Y114-1426-SM-4TT6W
50-59 years, female
361.7
GTEX-13RTK-0826-SM-5Q5C6
20-29 years, male
355.9
GTEX-Z9EW-0926-SM-5CVMM
40-49 years, male
352.9
GTEX-WH7G-1626-SM-4LVMY
40-49 years, male
301.9
GTEX-13O21-1026-SM-5IJDU
50-59 years, male
300.5
GTEX-1399U-2126-SM-5IFEZ
50-59 years, female
269.3
GTEX-11VI4-1626-SM-5EQKO
40-49 years, female
187.4
GTEX-Y3IK-1726-SM-4YCCR
50-59 years, female
152.8
GTEX-Y5LM-1626-SM-4VDTB
40-49 years, female
146.2
GTEX-WRHK-1026-SM-4MVOD
20-29 years, female
133.0
GTEX-WFG8-1626-SM-4LVMB
20-29 years, male
129.6
GTEX-111CU-1326-SM-5NQ8L
50-59 years, male
113.9
GTEX-ZP4G-1626-SM-57WGD
20-29 years, female
113.0
GTEX-X15G-1426-SM-4PQZK
50-59 years, female
112.2
GTEX-12WSK-1526-SM-5CVNO
40-49 years, female
95.0
GTEX-131XG-1726-SM-5LZUR
50-59 years, female
91.6
GTEX-ZQUD-0926-SM-57WE3
30-39 years, male
90.3
GTEX-145ME-0926-SM-5O9AR
40-49 years, female
79.0
GTEX-13OVI-1926-SM-5IJCG
60-69 years, female
74.5
GTEX-ZQG8-2526-SM-57WEQ
60-69 years, female
70.5
GTEX-13QBU-1926-SM-5IJEW
40-49 years, female
52.6
GTEX-ZF2S-1726-SM-57WFT
50-59 years, female
45.3
GTEX-VUSG-1726-SM-4KKZL
50-59 years, male
35.8
GTEX-117YX-0326-SM-5GICL
50-59 years, male
30.1
GTEX-148VJ-2226-SM-5NQ9M
70-79 years, male
18.3
GTEX-1192X-2526-SM-59868
50-59 years, male
17.0
GTEX-XMK1-1826-SM-4B66F
40-49 years, male
12.8
GTEX-13111-1426-SM-5DUW3
50-59 years, male
9.0
GTEX-UPK5-2026-SM-4JBIM
40-49 years, male
5.3
GTEX-WEY5-1526-SM-4LMJF
40-49 years, female
4.8
GTEX-ZC5H-2326-SM-4WAYT
40-49 years, female
3.3
Show all
SMALL INTESTINE - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.