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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 312.2
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 156.5
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 151.8
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 274.1
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 224
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 313.8
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 256.3
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 347.5
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 442.4
Min RPKM: 14.4
Std RPKM: 95.2
Median RPKM: 160.4
GTEX-131XE-0326-SM-5LZVO
50-59 years, male
442.4
GTEX-S32W-1926-SM-4AD63
50-59 years, female
413.3
GTEX-132NY-0926-SM-5P9G3
60-69 years, male
400.7
GTEX-144GM-1326-SM-5LU5E
20-29 years, male
374.4
GTEX-146FH-1526-SM-5NQBU
50-59 years, female
366.2
GTEX-QEL4-1226-SM-447A4
50-59 years, male
359.5
GTEX-QDVN-0826-SM-48TZ2
50-59 years, male
359.3
GTEX-Y5LM-0426-SM-4VBRO
40-49 years, female
357.2
GTEX-YB5E-0326-SM-5IFHU
40-49 years, male
349.1
GTEX-TKQ2-1726-SM-4DXUP
50-59 years, male
338.3
GTEX-ZTPG-1426-SM-51MT3
20-29 years, female
322.9
GTEX-RM2N-1926-SM-48FCU
50-59 years, male
321.3
GTEX-13PVR-0126-SM-5S2PY
60-69 years, female
320.3
GTEX-139YR-0226-SM-5IFEM
50-59 years, male
319.7
GTEX-Q734-0326-SM-48U15
40-49 years, female
313.6
GTEX-P78B-1326-SM-3P611
40-49 years, female
309.7
GTEX-S33H-1626-SM-4AD68
30-39 years, male
296.5
GTEX-12696-0826-SM-5EGGE
60-69 years, male
296.2
GTEX-VUSG-0126-SM-4KL1X
50-59 years, male
292.7
GTEX-X3Y1-2726-SM-4PQZH
40-49 years, male
281.7
GTEX-YEC4-0826-SM-5P9FV
40-49 years, male
280.1
GTEX-Z9EW-0426-SM-5CVM9
40-49 years, male
267.7
GTEX-ZPU1-0826-SM-57WG2
40-49 years, male
264.4
GTEX-U3ZN-0226-SM-3DB8D
30-39 years, female
263.9
GTEX-REY6-1226-SM-48FDR
60-69 years, male
262.8
GTEX-ZF29-2026-SM-4WWB7
60-69 years, female
253.9
GTEX-14C38-1526-SM-5RQJ7
50-59 years, male
251.3
GTEX-ZZPU-0426-SM-5GZYH
50-59 years, female
246.9
GTEX-13NZ9-1326-SM-5MR3V
50-59 years, male
244.5
GTEX-13SLX-1226-SM-5S2Q6
50-59 years, female
237.9
GTEX-13113-1326-SM-5GCOI
60-69 years, female
232.1
GTEX-13FTW-1126-SM-5J2NV
40-49 years, male
232.1
GTEX-12WSG-0626-SM-5FQTQ
50-59 years, female
230.7
GTEX-12KS4-1326-SM-5LUB3
30-39 years, male
229.7
GTEX-11EQ9-0526-SM-5A5JZ
30-39 years, male
227.9
GTEX-WFON-1726-SM-4LVMQ
40-49 years, male
227.0
GTEX-12WSL-0226-SM-5CVMJ
50-59 years, male
226.4
GTEX-139TS-1426-SM-5IFJD
60-69 years, male
224.3
GTEX-R53T-0326-SM-48FEC
50-59 years, female
218.6
GTEX-WQUQ-1926-SM-4OOSA
60-69 years, male
217.5
GTEX-S4Z8-0526-SM-4AD4T
60-69 years, male
213.9
GTEX-YFC4-1526-SM-5IFJS
40-49 years, female
213.5
GTEX-145MF-0826-SM-5QGQA
50-59 years, male
203.3
GTEX-1399R-1226-SM-5P9GF
30-39 years, male
201.9
GTEX-WYVS-1926-SM-4PQZ2
40-49 years, female
201.7
GTEX-UPK5-1426-SM-4JBHH
40-49 years, male
196.1
GTEX-RU72-1426-SM-46MUF
50-59 years, female
193.7
GTEX-14E1K-0326-SM-5S2PE
50-59 years, male
191.5
GTEX-Y5V5-0926-SM-4VBPZ
60-69 years, female
187.0
GTEX-13N2G-0926-SM-5IFGJ
60-69 years, male
186.3
GTEX-13N11-0926-SM-5IJG2
50-59 years, female
185.9
GTEX-X4XY-1626-SM-46MVN
60-69 years, male
185.3
GTEX-UPIC-0926-SM-4IHLV
20-29 years, female
181.6
GTEX-ZVP2-0626-SM-51MSO
50-59 years, male
180.7
GTEX-ZF2S-3026-SM-4WWCH
50-59 years, female
175.8
GTEX-ZAB5-0426-SM-5CVMI
50-59 years, male
172.8
GTEX-UTHO-2426-SM-4JBHD
60-69 years, male
168.1
GTEX-139TU-0826-SM-5IJFG
60-69 years, male
164.3
GTEX-1212Z-0226-SM-59HLF
60-69 years, male
163.5
GTEX-147JS-1126-SM-5RQIW
60-69 years, male
160.4
GTEX-14AS3-0126-SM-5Q5F4
40-49 years, female
160.1
GTEX-1497J-0726-SM-5Q5D1
60-69 years, male
153.4
GTEX-X261-1726-SM-4PQYT
50-59 years, male
152.0
GTEX-ZYY3-0626-SM-5NQ6W
60-69 years, female
151.7
GTEX-XOTO-0826-SM-4B65O
50-59 years, male
147.7
GTEX-13FLV-0326-SM-5N9DJ
50-59 years, male
147.4
GTEX-OOBJ-0826-SM-3NB2K
60-69 years, male
146.6
GTEX-145MO-2326-SM-5NQ9K
60-69 years, male
145.5
GTEX-147F4-1426-SM-5LUA8
50-59 years, male
141.8
GTEX-PX3G-0826-SM-48TZS
20-29 years, female
137.6
GTEX-QESD-2026-SM-447BI
20-29 years, male
127.3
GTEX-14DAQ-1726-SM-5S2R2
60-69 years, female
125.4
GTEX-QV44-0326-SM-4R1KD
50-59 years, male
123.3
GTEX-1399T-0826-SM-5IFES
60-69 years, male
123.1
GTEX-11WQC-0726-SM-5EQMR
60-69 years, male
122.5
GTEX-12WSD-1426-SM-5GCN9
60-69 years, female
122.4
GTEX-14A5I-1726-SM-5QGQ5
50-59 years, female
118.8
GTEX-11OF3-0726-SM-5BC4Z
60-69 years, male
118.2
GTEX-QEG4-1826-SM-4R1JN
30-39 years, male
115.9
GTEX-11ZVC-0726-SM-5FQT9
50-59 years, female
113.8
GTEX-12WSM-0726-SM-5GCOW
60-69 years, male
113.6
GTEX-12WSI-0226-SM-5GCNA
50-59 years, male
113.5
GTEX-RTLS-1326-SM-46MUN
60-69 years, female
112.5
GTEX-X4EO-1126-SM-4QARQ
60-69 years, female
110.8
GTEX-14753-1626-SM-5NQ9L
60-69 years, male
110.7
GTEX-13QJC-0726-SM-5RQJK
60-69 years, female
109.7
GTEX-13NZB-0626-SM-5IFH6
30-39 years, male
108.3
GTEX-11DXZ-0126-SM-5EGGY
50-59 years, male
107.6
GTEX-1269C-0626-SM-5FQSS
60-69 years, female
106.9
GTEX-13NYB-1026-SM-5IFH3
40-49 years, male
106.4
GTEX-ZAB4-0826-SM-5LU9D
40-49 years, male
103.6
GTEX-13OW6-2626-SM-5IFF2
50-59 years, male
100.3
GTEX-ZVT3-1626-SM-5GU66
60-69 years, female
90.8
GTEX-ZYT6-0626-SM-5E45V
30-39 years, male
90.5
GTEX-13FTZ-0726-SM-5IFFY
60-69 years, male
87.2
GTEX-XBEC-1526-SM-4AT68
50-59 years, male
85.2
GTEX-131XH-0626-SM-5LZWH
50-59 years, male
84.9
GTEX-13112-1426-SM-5EGH8
50-59 years, male
83.4
GTEX-T6MN-1226-SM-3NMA5
50-59 years, male
82.3
GTEX-X4EP-1026-SM-4QAS5
60-69 years, female
80.3
GTEX-11NV4-1326-SM-5HL6V
60-69 years, male
79.4
GTEX-RWSA-1426-SM-47JXA
40-49 years, male
78.8
GTEX-11ZTS-1426-SM-5EQMM
60-69 years, female
78.5
GTEX-WZTO-0626-SM-4PQYY
40-49 years, male
78.2
GTEX-131YS-1626-SM-5HL6C
60-69 years, female
75.5
GTEX-13VXU-0926-SM-5IFFH
50-59 years, male
74.8
GTEX-YECK-1926-SM-4W21H
60-69 years, male
74.8
GTEX-ZVT4-0626-SM-5E45T
50-59 years, female
73.4
GTEX-11DXY-0526-SM-5EGGQ
60-69 years, male
71.9
GTEX-Q2AG-1126-SM-48U1P
40-49 years, female
70.3
GTEX-11NUK-1226-SM-5P9GM
50-59 years, male
70.2
GTEX-11GSP-0626-SM-5986T
60-69 years, female
67.7
GTEX-SJXC-1226-SM-4DM78
60-69 years, male
65.5
GTEX-13O3O-1826-SM-5IFGW
60-69 years, female
64.7
GTEX-RNOR-1426-SM-48FDJ
50-59 years, female
63.0
GTEX-RN64-1826-SM-48FDV
50-59 years, male
50.9
GTEX-145LU-1326-SM-5LU9N
50-59 years, male
45.4
GTEX-11ZUS-2526-SM-59872
30-39 years, male
43.1
GTEX-12ZZZ-1326-SM-59HKW
60-69 years, male
14.4
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.