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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 1033.4
Min RPKM: 146.7
Std RPKM: 169.7
Median RPKM: 422.9
GTEX-11DXX-1726-SM-5H11T
60-69 years, female
1033.4
GTEX-ZE7O-2426-SM-57WD7
50-59 years, female
920.8
GTEX-14DAQ-2326-SM-5S2QX
60-69 years, female
883.0
GTEX-ZTPG-2226-SM-57WF9
20-29 years, female
814.7
GTEX-11GSP-2226-SM-5HL5Q
60-69 years, female
759.5
GTEX-ZYVF-0326-SM-5GIES
50-59 years, female
745.7
GTEX-13U4I-2026-SM-5LU3L
40-49 years, female
705.6
GTEX-12ZZX-1926-SM-5EGKC
40-49 years, female
692.1
GTEX-12WSD-2926-SM-5LZUH
60-69 years, female
681.8
GTEX-147F3-1526-SM-5SIAK
50-59 years, female
649.5
GTEX-YFC4-2926-SM-5IFJ8
40-49 years, female
647.1
GTEX-131YS-2426-SM-5J2OD
60-69 years, female
630.8
GTEX-13QIC-1826-SM-5J1MY
60-69 years, female
628.4
GTEX-11P81-2126-SM-5HL6N
30-39 years, female
622.8
GTEX-13PVR-1426-SM-5S2PW
60-69 years, female
609.8
GTEX-PLZ4-2726-SM-3P61A
50-59 years, female
605.9
GTEX-11TTK-2726-SM-5GU58
60-69 years, female
602.7
GTEX-QDT8-2526-SM-48TYX
30-39 years, female
592.7
GTEX-13N11-1526-SM-5L3FL
50-59 years, female
573.7
GTEX-UJHI-1326-SM-4IHJO
50-59 years, female
572.4
GTEX-113JC-1926-SM-5N9GE
50-59 years, female
556.5
GTEX-ZC5H-2226-SM-4WAWS
40-49 years, female
556.4
GTEX-RWS6-1726-SM-47JXP
60-69 years, female
552.5
GTEX-X8HC-2826-SM-46MWJ
50-59 years, female
549.1
GTEX-OHPL-2526-SM-3MJGT
60-69 years, female
548.2
GTEX-XV7Q-1626-SM-4BRWC
40-49 years, female
548.1
GTEX-ZVT3-2726-SM-5GU5X
60-69 years, female
524.6
GTEX-W5WG-1026-SM-4LMIF
50-59 years, female
519.2
GTEX-WEY5-0826-SM-4LMIH
40-49 years, female
518.7
GTEX-12WSJ-1326-SM-5GCOB
40-49 years, female
491.8
GTEX-QCQG-1226-SM-48U23
50-59 years, female
489.2
GTEX-146FH-2626-SM-5Q5E1
50-59 years, female
487.6
GTEX-TSE9-2526-SM-4DXUS
60-69 years, female
479.6
GTEX-ZV6S-1326-SM-59HJA
40-49 years, female
478.9
GTEX-12WSB-2426-SM-5EGJC
60-69 years, female
478.5
GTEX-ZAJG-2926-SM-5HL8P
50-59 years, female
468.8
GTEX-ZGAY-2226-SM-4YCCX
40-49 years, female
466.8
GTEX-1117F-2526-SM-5GZY6
60-69 years, female
453.7
GTEX-PX3G-2526-SM-48TZV
20-29 years, female
452.0
GTEX-13OVI-0926-SM-5J1MI
60-69 years, female
449.9
GTEX-Q734-1426-SM-48TZQ
40-49 years, female
449.9
GTEX-13W3W-2326-SM-5LU4Y
60-69 years, female
447.4
GTEX-WRHU-2926-SM-4MVNQ
50-59 years, female
444.7
GTEX-ZQG8-1126-SM-51MRL
60-69 years, female
437.7
GTEX-13D11-1326-SM-5IJFY
50-59 years, female
431.8
GTEX-Y3IK-2226-SM-4YCD4
50-59 years, female
428.9
GTEX-11EM3-1826-SM-5A5KO
20-29 years, female
425.9
GTEX-ZVT2-0626-SM-5GICR
50-59 years, female
425.8
GTEX-TMMY-1926-SM-4DXUU
40-49 years, female
420.1
GTEX-145ME-1426-SM-5RQJS
40-49 years, female
417.7
GTEX-146FR-2426-SM-5NQAU
60-69 years, female
414.9
GTEX-X15G-1926-SM-4PQZQ
50-59 years, female
410.7
GTEX-11EMC-1926-SM-5A5JU
60-69 years, female
409.9
GTEX-ZYWO-2026-SM-5GIDA
40-49 years, female
402.0
GTEX-NL3G-2526-SM-4SOIE
60-69 years, female
392.9
GTEX-T2IS-1926-SM-4DM74
20-29 years, female
391.3
GTEX-Y114-1926-SM-4TT8J
50-59 years, female
388.6
GTEX-P78B-2226-SM-3P5ZZ
40-49 years, female
388.1
GTEX-RU1J-1426-SM-46MUV
20-29 years, female
386.9
GTEX-N7MT-1926-SM-3LK5N
60-69 years, female
385.5
GTEX-14BMU-1926-SM-5S2QC
20-29 years, female
381.7
GTEX-ZLWG-1126-SM-4WWFQ
50-59 years, female
381.4
GTEX-ZYY3-2626-SM-5N9DH
60-69 years, female
380.6
GTEX-QVJO-2526-SM-4R1KB
60-69 years, female
378.7
GTEX-PWOO-2026-SM-48TDE
40-49 years, female
362.9
GTEX-YJ8O-1226-SM-5P9JE
40-49 years, female
355.5
GTEX-1399S-2326-SM-5K7YV
30-39 years, female
343.6
GTEX-S4UY-1326-SM-4AD4X
40-49 years, female
336.1
GTEX-OHPK-2526-SM-3MJH9
50-59 years, female
334.9
GTEX-Y8LW-1426-SM-5RQJJ
50-59 years, female
325.8
GTEX-1399U-1526-SM-5J2N7
50-59 years, female
319.5
GTEX-14A5I-2726-SM-5SIB3
50-59 years, female
313.6
GTEX-XUJ4-1626-SM-4BONV
60-69 years, female
312.3
GTEX-ZXES-0626-SM-5E45P
30-39 years, female
296.8
GTEX-ZP4G-0826-SM-4WWF3
20-29 years, female
290.3
GTEX-P4PP-2526-SM-3P61P
30-39 years, female
290.1
GTEX-11XUK-1326-SM-5EQM4
40-49 years, female
288.5
GTEX-131XG-2126-SM-5DUXG
50-59 years, female
287.6
GTEX-TML8-1126-SM-4DXSS
40-49 years, female
283.2
GTEX-U3ZN-0926-SM-4DXTU
30-39 years, female
281.8
GTEX-11VI4-0726-SM-5GU5B
40-49 years, female
280.1
GTEX-T6MO-1226-SM-4DM5S
40-49 years, female
273.0
GTEX-XUW1-0326-SM-4BOOR
50-59 years, female
271.3
GTEX-S7SF-1426-SM-4AT5A
20-29 years, female
271.0
GTEX-S4P3-1126-SM-4AD52
50-59 years, female
259.7
GTEX-13QBU-1726-SM-5IJFQ
40-49 years, female
259.4
GTEX-PWN1-2526-SM-48TDS
40-49 years, female
246.0
GTEX-UPIC-1426-SM-4IHLQ
20-29 years, female
243.5
GTEX-13PL7-2726-SM-5L3GB
60-69 years, female
241.7
GTEX-14AS3-1726-SM-5RQJV
40-49 years, female
233.7
GTEX-SE5C-1126-SM-4BRWZ
40-49 years, female
216.7
GTEX-ZZPU-2226-SM-5EGIV
50-59 years, female
211.2
GTEX-PWCY-1726-SM-48TD3
20-29 years, female
201.4
GTEX-132AR-1626-SM-5EGHP
50-59 years, female
185.7
GTEX-11I78-2026-SM-5987C
50-59 years, female
169.0
GTEX-S341-1226-SM-4AD5S
40-49 years, female
146.7
Show all
VAGINA - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.