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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 1702.0
Min RPKM: 309.8
Std RPKM: 310.4
Median RPKM: 908.2
GTEX-13FTW-2026-SM-5IJE2
40-49 years, male
1702.0
GTEX-14E6E-1626-SM-5RQI7
30-39 years, male
1663.6
GTEX-13PL7-2626-SM-5IFH4
60-69 years, female
1602.5
GTEX-ZTX8-0526-SM-59HLD
20-29 years, male
1496.4
GTEX-11EQ9-1326-SM-5985X
30-39 years, male
1481.0
GTEX-ZVZP-1826-SM-5GZXB
50-59 years, male
1452.2
GTEX-1122O-1326-SM-5H11F
60-69 years, female
1430.9
GTEX-ZLV1-1126-SM-4WWBW
60-69 years, female
1362.5
GTEX-ZVP2-1726-SM-5GU5P
50-59 years, male
1289.4
GTEX-ZVT2-2126-SM-5NQ93
50-59 years, female
1278.7
GTEX-1399S-2026-SM-5KM4B
30-39 years, female
1260.4
GTEX-111YS-1426-SM-5GID8
60-69 years, male
1249.0
GTEX-11P7K-1626-SM-5GU63
30-39 years, male
1243.9
GTEX-145LT-1026-SM-5LU9O
40-49 years, male
1221.0
GTEX-YB5E-1526-SM-5IFIE
40-49 years, male
1185.7
GTEX-YEC4-1726-SM-4W21E
40-49 years, male
1158.5
GTEX-ZA64-1226-SM-5HL7B
20-29 years, male
1149.9
GTEX-WRHK-1026-SM-4MVOD
20-29 years, female
1139.2
GTEX-ZTPG-2626-SM-57WFX
20-29 years, female
1117.1
GTEX-11XUK-1426-SM-5EQMG
40-49 years, female
1099.8
GTEX-14DAR-1426-SM-5RQIR
50-59 years, male
1095.0
GTEX-WFJO-0926-SM-4LVM2
30-39 years, male
1070.4
GTEX-1399U-2126-SM-5IFEZ
50-59 years, female
1062.0
GTEX-Y9LG-1626-SM-5IFHM
30-39 years, male
1054.7
GTEX-11DXX-1626-SM-5H11H
60-69 years, female
1037.4
GTEX-ZYFG-2026-SM-5E43Y
60-69 years, female
1034.7
GTEX-ZLFU-1526-SM-4WWBT
40-49 years, male
1032.0
GTEX-Z9EW-0926-SM-5CVMM
40-49 years, male
1026.3
GTEX-13CF3-1226-SM-5LZXN
60-69 years, female
1026.1
GTEX-13D11-0726-SM-5LZZB
50-59 years, female
1024.4
GTEX-13FH7-1226-SM-5IJFK
50-59 years, female
1020.2
GTEX-XAJ8-0526-SM-47JYK
40-49 years, male
1005.9
GTEX-13RTK-0826-SM-5Q5C6
20-29 years, male
1004.8
GTEX-ZPIC-2326-SM-57WDW
40-49 years, female
994.1
GTEX-139YR-2226-SM-5IFFW
50-59 years, male
993.8
GTEX-11VI4-1626-SM-5EQKO
40-49 years, female
980.6
GTEX-145ME-0926-SM-5O9AR
40-49 years, female
966.1
GTEX-VUSG-1726-SM-4KKZL
50-59 years, male
961.7
GTEX-1192X-2526-SM-59868
50-59 years, male
952.2
GTEX-XGQ4-1326-SM-4GIDU
50-59 years, male
935.5
GTEX-11P82-0826-SM-5P9GU
20-29 years, male
933.7
GTEX-ZPCL-1726-SM-57WEO
60-69 years, female
923.3
GTEX-ZXES-1526-SM-5NQ95
30-39 years, female
914.1
GTEX-13O61-1326-SM-5KM31
60-69 years, male
912.9
GTEX-11NSD-1726-SM-5N9C3
20-29 years, male
903.6
GTEX-ZQG8-2526-SM-57WEQ
60-69 years, female
897.0
GTEX-XXEK-1026-SM-4BRUW
50-59 years, male
882.8
GTEX-UPK5-2026-SM-4JBIM
40-49 years, male
877.3
GTEX-XBED-1426-SM-4AT4G
60-69 years, male
869.2
GTEX-ZZ64-0526-SM-5GZXM
20-29 years, male
866.3
GTEX-ZYWO-1526-SM-5SIAL
40-49 years, female
846.9
GTEX-ZTSS-0926-SM-59865
40-49 years, male
830.8
GTEX-148VJ-2226-SM-5NQ9M
70-79 years, male
830.3
GTEX-VJYA-0926-SM-4KL1N
60-69 years, male
822.9
GTEX-X15G-1426-SM-4PQZK
50-59 years, female
815.4
GTEX-X5EB-1626-SM-4E3IV
40-49 years, male
812.3
GTEX-WH7G-1626-SM-4LVMY
40-49 years, male
798.3
GTEX-Y5LM-1626-SM-4VDTB
40-49 years, female
764.3
GTEX-12BJ1-1926-SM-5HL9Z
60-69 years, male
763.7
GTEX-XUZC-1426-SM-4BRV3
30-39 years, female
753.2
GTEX-139T6-1026-SM-5IJGC
50-59 years, male
748.5
GTEX-11I78-1126-SM-5A5K5
50-59 years, female
729.1
GTEX-Y114-1426-SM-4TT6W
50-59 years, female
723.3
GTEX-WFG7-1726-SM-4LVME
20-29 years, male
712.7
GTEX-ZEX8-1826-SM-57WBH
50-59 years, male
712.1
GTEX-ZC5H-2326-SM-4WAYT
40-49 years, female
695.6
GTEX-13QBU-1926-SM-5IJEW
40-49 years, female
691.3
GTEX-11DXZ-1326-SM-5H11X
50-59 years, male
653.5
GTEX-ZP4G-1626-SM-57WGD
20-29 years, female
652.9
GTEX-133LE-1426-SM-5IFH1
20-29 years, female
647.4
GTEX-13113-1226-SM-5EGHT
60-69 years, female
646.2
GTEX-YF7O-1826-SM-5IFIU
50-59 years, male
620.0
GTEX-131XF-1326-SM-5GCMQ
60-69 years, male
616.5
GTEX-Y3IK-1726-SM-4YCCR
50-59 years, female
606.0
GTEX-13O21-1026-SM-5IJDU
50-59 years, male
598.0
GTEX-1399R-2026-SM-5K7WN
30-39 years, male
553.5
GTEX-WFG8-1626-SM-4LVMB
20-29 years, male
547.5
GTEX-13111-1426-SM-5DUW3
50-59 years, male
532.4
GTEX-131XG-1726-SM-5LZUR
50-59 years, female
497.9
GTEX-12WSK-1526-SM-5CVNO
40-49 years, female
478.2
GTEX-XMK1-1826-SM-4B66F
40-49 years, male
410.2
GTEX-WEY5-1526-SM-4LMJF
40-49 years, female
409.2
GTEX-WQUQ-2426-SM-4MVNW
60-69 years, male
396.1
GTEX-117YX-0326-SM-5GICL
50-59 years, male
396.0
GTEX-ZF2S-1726-SM-57WFT
50-59 years, female
391.0
GTEX-111CU-1326-SM-5NQ8L
50-59 years, male
372.7
GTEX-13OVI-1926-SM-5IJCG
60-69 years, female
327.9
GTEX-ZQUD-0926-SM-57WE3
30-39 years, male
309.8
Show all
SMALL INTESTINE - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.