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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 632.1
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 1483.2
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 1661.5
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 2393.9
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 2018
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 640.5
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 764.3
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 981.9
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 1279.8
Min RPKM: 99.3
Std RPKM: 137.3
Median RPKM: 305.1
GTEX-13SLX-1226-SM-5S2Q6
50-59 years, female
1279.8
GTEX-13N11-0926-SM-5IJG2
50-59 years, female
630.5
GTEX-139TS-1426-SM-5IFJD
60-69 years, male
606.1
GTEX-YB5E-0326-SM-5IFHU
40-49 years, male
580.9
GTEX-WYVS-1926-SM-4PQZ2
40-49 years, female
552.4
GTEX-12WSL-0226-SM-5CVMJ
50-59 years, male
534.1
GTEX-ZAB5-0426-SM-5CVMI
50-59 years, male
504.4
GTEX-139YR-0226-SM-5IFEM
50-59 years, male
501.8
GTEX-1399T-0826-SM-5IFES
60-69 years, male
487.1
GTEX-Q734-0326-SM-48U15
40-49 years, female
485.0
GTEX-13NYB-1026-SM-5IFH3
40-49 years, male
476.1
GTEX-13OW6-2626-SM-5IFF2
50-59 years, male
466.8
GTEX-14C38-1526-SM-5RQJ7
50-59 years, male
465.7
GTEX-ZVP2-0626-SM-51MSO
50-59 years, male
462.4
GTEX-ZVT3-1626-SM-5GU66
60-69 years, female
461.2
GTEX-ZPU1-0826-SM-57WG2
40-49 years, male
458.8
GTEX-11EQ9-0526-SM-5A5JZ
30-39 years, male
447.8
GTEX-QEL4-1226-SM-447A4
50-59 years, male
441.0
GTEX-WFON-1726-SM-4LVMQ
40-49 years, male
439.9
GTEX-1399R-1226-SM-5P9GF
30-39 years, male
428.6
GTEX-ZF29-2026-SM-4WWB7
60-69 years, female
422.1
GTEX-S32W-1926-SM-4AD63
50-59 years, female
421.9
GTEX-131XE-0326-SM-5LZVO
50-59 years, male
420.7
GTEX-TKQ2-1726-SM-4DXUP
50-59 years, male
420.1
GTEX-13NZ9-1326-SM-5MR3V
50-59 years, male
417.7
GTEX-ZTPG-1426-SM-51MT3
20-29 years, female
413.6
GTEX-RM2N-1926-SM-48FCU
50-59 years, male
408.2
GTEX-S33H-1626-SM-4AD68
30-39 years, male
403.9
GTEX-QDVN-0826-SM-48TZ2
50-59 years, male
403.4
GTEX-VUSG-0126-SM-4KL1X
50-59 years, male
401.6
GTEX-11DXZ-0126-SM-5EGGY
50-59 years, male
400.6
GTEX-12WSI-0226-SM-5GCNA
50-59 years, male
389.6
GTEX-X3Y1-2726-SM-4PQZH
40-49 years, male
382.5
GTEX-12KS4-1326-SM-5LUB3
30-39 years, male
381.2
GTEX-1269C-0626-SM-5FQSS
60-69 years, female
379.1
GTEX-14753-1626-SM-5NQ9L
60-69 years, male
372.0
GTEX-145MF-0826-SM-5QGQA
50-59 years, male
371.4
GTEX-OOBJ-0826-SM-3NB2K
60-69 years, male
367.9
GTEX-ZF2S-3026-SM-4WWCH
50-59 years, female
365.1
GTEX-PX3G-0826-SM-48TZS
20-29 years, female
361.2
GTEX-12WSD-1426-SM-5GCN9
60-69 years, female
353.3
GTEX-12WSG-0626-SM-5FQTQ
50-59 years, female
352.0
GTEX-UTHO-2426-SM-4JBHD
60-69 years, male
351.2
GTEX-YECK-1926-SM-4W21H
60-69 years, male
343.9
GTEX-11WQC-0726-SM-5EQMR
60-69 years, male
343.3
GTEX-Y5LM-0426-SM-4VBRO
40-49 years, female
343.3
GTEX-S4Z8-0526-SM-4AD4T
60-69 years, male
341.9
GTEX-QV44-0326-SM-4R1KD
50-59 years, male
335.4
GTEX-ZAB4-0826-SM-5LU9D
40-49 years, male
334.5
GTEX-Q2AG-1126-SM-48U1P
40-49 years, female
327.7
GTEX-13FLV-0326-SM-5N9DJ
50-59 years, male
326.3
GTEX-T6MN-1226-SM-3NMA5
50-59 years, male
323.5
GTEX-1497J-0726-SM-5Q5D1
60-69 years, male
314.1
GTEX-P78B-1326-SM-3P611
40-49 years, female
314.0
GTEX-UPK5-1426-SM-4JBHH
40-49 years, male
312.9
GTEX-146FH-1526-SM-5NQBU
50-59 years, female
311.0
GTEX-13FTW-1126-SM-5J2NV
40-49 years, male
310.7
GTEX-144GM-1326-SM-5LU5E
20-29 years, male
308.7
GTEX-139TU-0826-SM-5IJFG
60-69 years, male
305.7
GTEX-13FTZ-0726-SM-5IFFY
60-69 years, male
305.1
GTEX-U3ZN-0226-SM-3DB8D
30-39 years, female
304.9
GTEX-ZZPU-0426-SM-5GZYH
50-59 years, female
304.6
GTEX-R53T-0326-SM-48FEC
50-59 years, female
304.0
GTEX-14DAQ-1726-SM-5S2R2
60-69 years, female
300.5
GTEX-147JS-1126-SM-5RQIW
60-69 years, male
296.0
GTEX-14AS3-0126-SM-5Q5F4
40-49 years, female
294.3
GTEX-Z9EW-0426-SM-5CVM9
40-49 years, male
291.4
GTEX-132NY-0926-SM-5P9G3
60-69 years, male
290.4
GTEX-YEC4-0826-SM-5P9FV
40-49 years, male
282.6
GTEX-Y5V5-0926-SM-4VBPZ
60-69 years, female
281.0
GTEX-X4EP-1026-SM-4QAS5
60-69 years, female
277.0
GTEX-SJXC-1226-SM-4DM78
60-69 years, male
275.9
GTEX-ZYY3-0626-SM-5NQ6W
60-69 years, female
274.8
GTEX-WQUQ-1926-SM-4OOSA
60-69 years, male
269.9
GTEX-14A5I-1726-SM-5QGQ5
50-59 years, female
267.1
GTEX-ZYT6-0626-SM-5E45V
30-39 years, male
267.1
GTEX-147F4-1426-SM-5LUA8
50-59 years, male
266.1
GTEX-145MO-2326-SM-5NQ9K
60-69 years, male
261.9
GTEX-11OF3-0726-SM-5BC4Z
60-69 years, male
261.6
GTEX-XOTO-0826-SM-4B65O
50-59 years, male
259.4
GTEX-12WSM-0726-SM-5GCOW
60-69 years, male
258.3
GTEX-13N2G-0926-SM-5IFGJ
60-69 years, male
252.4
GTEX-XBEC-1526-SM-4AT68
50-59 years, male
251.8
GTEX-QEG4-1826-SM-4R1JN
30-39 years, male
244.3
GTEX-14E1K-0326-SM-5S2PE
50-59 years, male
242.6
GTEX-11NV4-1326-SM-5HL6V
60-69 years, male
241.0
GTEX-13PVR-0126-SM-5S2PY
60-69 years, female
238.3
GTEX-X4EO-1126-SM-4QARQ
60-69 years, female
238.2
GTEX-RU72-1426-SM-46MUF
50-59 years, female
238.0
GTEX-QESD-2026-SM-447BI
20-29 years, male
236.4
GTEX-ZVT4-0626-SM-5E45T
50-59 years, female
232.6
GTEX-X261-1726-SM-4PQYT
50-59 years, male
231.2
GTEX-11ZVC-0726-SM-5FQT9
50-59 years, female
230.5
GTEX-11ZTS-1426-SM-5EQMM
60-69 years, female
229.4
GTEX-REY6-1226-SM-48FDR
60-69 years, male
228.3
GTEX-13VXU-0926-SM-5IFFH
50-59 years, male
226.6
GTEX-UPIC-0926-SM-4IHLV
20-29 years, female
224.0
GTEX-1212Z-0226-SM-59HLF
60-69 years, male
222.8
GTEX-131XH-0626-SM-5LZWH
50-59 years, male
222.6
GTEX-12696-0826-SM-5EGGE
60-69 years, male
221.8
GTEX-13QJC-0726-SM-5RQJK
60-69 years, female
221.0
GTEX-13NZB-0626-SM-5IFH6
30-39 years, male
220.1
GTEX-RWSA-1426-SM-47JXA
40-49 years, male
214.6
GTEX-145LU-1326-SM-5LU9N
50-59 years, male
210.6
GTEX-RTLS-1326-SM-46MUN
60-69 years, female
209.7
GTEX-11GSP-0626-SM-5986T
60-69 years, female
206.8
GTEX-X4XY-1626-SM-46MVN
60-69 years, male
201.1
GTEX-13112-1426-SM-5EGH8
50-59 years, male
191.0
GTEX-11DXY-0526-SM-5EGGQ
60-69 years, male
189.5
GTEX-RN64-1826-SM-48FDV
50-59 years, male
184.9
GTEX-RNOR-1426-SM-48FDJ
50-59 years, female
183.6
GTEX-13113-1326-SM-5GCOI
60-69 years, female
182.8
GTEX-131YS-1626-SM-5HL6C
60-69 years, female
172.0
GTEX-11NUK-1226-SM-5P9GM
50-59 years, male
170.2
GTEX-13O3O-1826-SM-5IFGW
60-69 years, female
165.5
GTEX-WZTO-0626-SM-4PQYY
40-49 years, male
158.9
GTEX-YFC4-1526-SM-5IFJS
40-49 years, female
157.9
GTEX-11ZUS-2526-SM-59872
30-39 years, male
144.1
GTEX-12ZZZ-1326-SM-59HKW
60-69 years, male
99.3
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.