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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 432.7
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 451.8
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 256.1
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 408.5
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 446.5
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 242.4
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 371.4
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 455.7
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 1491.8
Min RPKM: 47.0
Std RPKM: 178.3
Median RPKM: 195.2
GTEX-131XE-0326-SM-5LZVO
50-59 years, male
1491.8
GTEX-146FH-1526-SM-5NQBU
50-59 years, female
751.1
GTEX-139YR-0226-SM-5IFEM
50-59 years, male
605.3
GTEX-QEL4-1226-SM-447A4
50-59 years, male
587.2
GTEX-ZPU1-0826-SM-57WG2
40-49 years, male
556.3
GTEX-Q734-0326-SM-48U15
40-49 years, female
500.9
GTEX-TKQ2-1726-SM-4DXUP
50-59 years, male
498.0
GTEX-P78B-1326-SM-3P611
40-49 years, female
483.7
GTEX-U3ZN-0226-SM-3DB8D
30-39 years, female
483.1
GTEX-Z9EW-0426-SM-5CVM9
40-49 years, male
476.2
GTEX-12WSL-0226-SM-5CVMJ
50-59 years, male
441.5
GTEX-VUSG-0126-SM-4KL1X
50-59 years, male
439.6
GTEX-QDVN-0826-SM-48TZ2
50-59 years, male
433.9
GTEX-144GM-1326-SM-5LU5E
20-29 years, male
420.8
GTEX-R53T-0326-SM-48FEC
50-59 years, female
417.7
GTEX-X4XY-1626-SM-46MVN
60-69 years, male
412.0
GTEX-S33H-1626-SM-4AD68
30-39 years, male
386.4
GTEX-132NY-0926-SM-5P9G3
60-69 years, male
379.4
GTEX-S32W-1926-SM-4AD63
50-59 years, female
372.8
GTEX-RM2N-1926-SM-48FCU
50-59 years, male
371.2
GTEX-YEC4-0826-SM-5P9FV
40-49 years, male
357.6
GTEX-13PVR-0126-SM-5S2PY
60-69 years, female
349.7
GTEX-Y5LM-0426-SM-4VBRO
40-49 years, female
341.9
GTEX-ZTPG-1426-SM-51MT3
20-29 years, female
336.9
GTEX-YB5E-0326-SM-5IFHU
40-49 years, male
325.1
GTEX-X3Y1-2726-SM-4PQZH
40-49 years, male
318.1
GTEX-14AS3-0126-SM-5Q5F4
40-49 years, female
300.1
GTEX-12KS4-1326-SM-5LUB3
30-39 years, male
299.2
GTEX-WQUQ-1926-SM-4OOSA
60-69 years, male
295.5
GTEX-ZAB5-0426-SM-5CVMI
50-59 years, male
293.9
GTEX-YFC4-1526-SM-5IFJS
40-49 years, female
286.7
GTEX-12696-0826-SM-5EGGE
60-69 years, male
285.5
GTEX-14C38-1526-SM-5RQJ7
50-59 years, male
284.1
GTEX-ZF29-2026-SM-4WWB7
60-69 years, female
282.1
GTEX-UPK5-1426-SM-4JBHH
40-49 years, male
276.3
GTEX-12WSG-0626-SM-5FQTQ
50-59 years, female
275.2
GTEX-ZZPU-0426-SM-5GZYH
50-59 years, female
274.8
GTEX-13113-1326-SM-5GCOI
60-69 years, female
268.2
GTEX-14E1K-0326-SM-5S2PE
50-59 years, male
258.3
GTEX-S4Z8-0526-SM-4AD4T
60-69 years, male
256.0
GTEX-13NZB-0626-SM-5IFH6
30-39 years, male
255.4
GTEX-1399R-1226-SM-5P9GF
30-39 years, male
255.3
GTEX-13SLX-1226-SM-5S2Q6
50-59 years, female
248.0
GTEX-ZYY3-0626-SM-5NQ6W
60-69 years, female
247.9
GTEX-13N2G-0926-SM-5IFGJ
60-69 years, male
245.5
GTEX-RU72-1426-SM-46MUF
50-59 years, female
233.7
GTEX-ZF2S-3026-SM-4WWCH
50-59 years, female
232.7
GTEX-139TS-1426-SM-5IFJD
60-69 years, male
231.9
GTEX-11EQ9-0526-SM-5A5JZ
30-39 years, male
229.3
GTEX-145MF-0826-SM-5QGQA
50-59 years, male
227.8
GTEX-OOBJ-0826-SM-3NB2K
60-69 years, male
226.8
GTEX-1269C-0626-SM-5FQSS
60-69 years, female
225.9
GTEX-UTHO-2426-SM-4JBHD
60-69 years, male
221.8
GTEX-UPIC-0926-SM-4IHLV
20-29 years, female
217.1
GTEX-WYVS-1926-SM-4PQZ2
40-49 years, female
216.3
GTEX-WFON-1726-SM-4LVMQ
40-49 years, male
205.6
GTEX-X261-1726-SM-4PQYT
50-59 years, male
202.9
GTEX-QV44-0326-SM-4R1KD
50-59 years, male
199.9
GTEX-147JS-1126-SM-5RQIW
60-69 years, male
197.4
GTEX-ZVP2-0626-SM-51MSO
50-59 years, male
195.2
GTEX-139TU-0826-SM-5IJFG
60-69 years, male
188.4
GTEX-11WQC-0726-SM-5EQMR
60-69 years, male
186.1
GTEX-Y5V5-0926-SM-4VBPZ
60-69 years, female
179.9
GTEX-REY6-1226-SM-48FDR
60-69 years, male
179.2
GTEX-13FTW-1126-SM-5J2NV
40-49 years, male
178.3
GTEX-XOTO-0826-SM-4B65O
50-59 years, male
173.8
GTEX-147F4-1426-SM-5LUA8
50-59 years, male
170.3
GTEX-13NZ9-1326-SM-5MR3V
50-59 years, male
170.1
GTEX-1212Z-0226-SM-59HLF
60-69 years, male
167.9
GTEX-T6MN-1226-SM-3NMA5
50-59 years, male
158.5
GTEX-XBEC-1526-SM-4AT68
50-59 years, male
157.7
GTEX-13FLV-0326-SM-5N9DJ
50-59 years, male
156.3
GTEX-11OF3-0726-SM-5BC4Z
60-69 years, male
155.8
GTEX-1399T-0826-SM-5IFES
60-69 years, male
153.6
GTEX-11ZVC-0726-SM-5FQT9
50-59 years, female
148.4
GTEX-11GSP-0626-SM-5986T
60-69 years, female
145.4
GTEX-131YS-1626-SM-5HL6C
60-69 years, female
145.3
GTEX-Q2AG-1126-SM-48U1P
40-49 years, female
142.5
GTEX-QEG4-1826-SM-4R1JN
30-39 years, male
142.5
GTEX-145MO-2326-SM-5NQ9K
60-69 years, male
139.5
GTEX-13OW6-2626-SM-5IFF2
50-59 years, male
138.3
GTEX-ZVT4-0626-SM-5E45T
50-59 years, female
137.8
GTEX-13QJC-0726-SM-5RQJK
60-69 years, female
135.7
GTEX-12WSD-1426-SM-5GCN9
60-69 years, female
135.0
GTEX-13NYB-1026-SM-5IFH3
40-49 years, male
134.5
GTEX-13FTZ-0726-SM-5IFFY
60-69 years, male
133.7
GTEX-11NV4-1326-SM-5HL6V
60-69 years, male
133.3
GTEX-PX3G-0826-SM-48TZS
20-29 years, female
129.1
GTEX-12WSM-0726-SM-5GCOW
60-69 years, male
121.6
GTEX-WZTO-0626-SM-4PQYY
40-49 years, male
121.3
GTEX-14A5I-1726-SM-5QGQ5
50-59 years, female
119.4
GTEX-12WSI-0226-SM-5GCNA
50-59 years, male
116.6
GTEX-13N11-0926-SM-5IJG2
50-59 years, female
115.6
GTEX-1497J-0726-SM-5Q5D1
60-69 years, male
113.8
GTEX-13VXU-0926-SM-5IFFH
50-59 years, male
113.0
GTEX-14DAQ-1726-SM-5S2R2
60-69 years, female
112.2
GTEX-QESD-2026-SM-447BI
20-29 years, male
111.2
GTEX-11DXZ-0126-SM-5EGGY
50-59 years, male
110.0
GTEX-ZAB4-0826-SM-5LU9D
40-49 years, male
102.4
GTEX-RWSA-1426-SM-47JXA
40-49 years, male
98.4
GTEX-13112-1426-SM-5EGH8
50-59 years, male
93.9
GTEX-RTLS-1326-SM-46MUN
60-69 years, female
92.1
GTEX-YECK-1926-SM-4W21H
60-69 years, male
91.9
GTEX-14753-1626-SM-5NQ9L
60-69 years, male
91.0
GTEX-ZVT3-1626-SM-5GU66
60-69 years, female
90.0
GTEX-ZYT6-0626-SM-5E45V
30-39 years, male
89.0
GTEX-11DXY-0526-SM-5EGGQ
60-69 years, male
87.5
GTEX-X4EO-1126-SM-4QARQ
60-69 years, female
87.2
GTEX-131XH-0626-SM-5LZWH
50-59 years, male
80.9
GTEX-145LU-1326-SM-5LU9N
50-59 years, male
79.3
GTEX-13O3O-1826-SM-5IFGW
60-69 years, female
78.1
GTEX-SJXC-1226-SM-4DM78
60-69 years, male
75.7
GTEX-11ZTS-1426-SM-5EQMM
60-69 years, female
72.7
GTEX-RNOR-1426-SM-48FDJ
50-59 years, female
72.6
GTEX-X4EP-1026-SM-4QAS5
60-69 years, female
68.6
GTEX-11NUK-1226-SM-5P9GM
50-59 years, male
68.2
GTEX-11ZUS-2526-SM-59872
30-39 years, male
55.6
GTEX-RN64-1826-SM-48FDV
50-59 years, male
54.5
GTEX-12ZZZ-1326-SM-59HKW
60-69 years, male
47.0
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.