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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 1468.6
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 1512.9
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 1223.5
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 1318.3
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 1256.6
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 1126.2
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 1103.3
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 1397
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 753.6
Min RPKM: 76.1
Std RPKM: 107.8
Median RPKM: 326.3
GTEX-R53T-0326-SM-48FEC
50-59 years, female
753.6
GTEX-139TS-1426-SM-5IFJD
60-69 years, male
640.4
GTEX-U3ZN-0226-SM-3DB8D
30-39 years, female
603.8
GTEX-Y5LM-0426-SM-4VBRO
40-49 years, female
588.7
GTEX-12KS4-1326-SM-5LUB3
30-39 years, male
574.3
GTEX-PX3G-0826-SM-48TZS
20-29 years, female
520.2
GTEX-QESD-2026-SM-447BI
20-29 years, male
512.2
GTEX-13SLX-1226-SM-5S2Q6
50-59 years, female
478.8
GTEX-RTLS-1326-SM-46MUN
60-69 years, female
471.4
GTEX-QEL4-1226-SM-447A4
50-59 years, male
466.2
GTEX-UTHO-2426-SM-4JBHD
60-69 years, male
458.2
GTEX-14AS3-0126-SM-5Q5F4
40-49 years, female
454.3
GTEX-ZYT6-0626-SM-5E45V
30-39 years, male
449.2
GTEX-X4EO-1126-SM-4QARQ
60-69 years, female
443.0
GTEX-13NZ9-1326-SM-5MR3V
50-59 years, male
437.8
GTEX-RU72-1426-SM-46MUF
50-59 years, female
432.0
GTEX-ZF29-2026-SM-4WWB7
60-69 years, female
426.1
GTEX-1399R-1226-SM-5P9GF
30-39 years, male
423.4
GTEX-ZPU1-0826-SM-57WG2
40-49 years, male
421.3
GTEX-YB5E-0326-SM-5IFHU
40-49 years, male
420.1
GTEX-REY6-1226-SM-48FDR
60-69 years, male
418.8
GTEX-13FLV-0326-SM-5N9DJ
50-59 years, male
418.3
GTEX-132NY-0926-SM-5P9G3
60-69 years, male
411.7
GTEX-ZF2S-3026-SM-4WWCH
50-59 years, female
409.5
GTEX-Z9EW-0426-SM-5CVM9
40-49 years, male
407.7
GTEX-P78B-1326-SM-3P611
40-49 years, female
407.1
GTEX-145MF-0826-SM-5QGQA
50-59 years, male
397.5
GTEX-QV44-0326-SM-4R1KD
50-59 years, male
391.5
GTEX-ZYY3-0626-SM-5NQ6W
60-69 years, female
387.3
GTEX-UPIC-0926-SM-4IHLV
20-29 years, female
383.6
GTEX-13N11-0926-SM-5IJG2
50-59 years, female
379.0
GTEX-147F4-1426-SM-5LUA8
50-59 years, male
378.0
GTEX-13FTW-1126-SM-5J2NV
40-49 years, male
377.3
GTEX-YFC4-1526-SM-5IFJS
40-49 years, female
371.6
GTEX-13OW6-2626-SM-5IFF2
50-59 years, male
367.5
GTEX-XOTO-0826-SM-4B65O
50-59 years, male
366.9
GTEX-1269C-0626-SM-5FQSS
60-69 years, female
365.4
GTEX-YECK-1926-SM-4W21H
60-69 years, male
365.2
GTEX-146FH-1526-SM-5NQBU
50-59 years, female
362.1
GTEX-WQUQ-1926-SM-4OOSA
60-69 years, male
359.2
GTEX-11EQ9-0526-SM-5A5JZ
30-39 years, male
357.5
GTEX-ZVP2-0626-SM-51MSO
50-59 years, male
355.2
GTEX-OOBJ-0826-SM-3NB2K
60-69 years, male
354.7
GTEX-13113-1326-SM-5GCOI
60-69 years, female
351.8
GTEX-145MO-2326-SM-5NQ9K
60-69 years, male
351.8
GTEX-RM2N-1926-SM-48FCU
50-59 years, male
350.3
GTEX-TKQ2-1726-SM-4DXUP
50-59 years, male
349.2
GTEX-14E1K-0326-SM-5S2PE
50-59 years, male
348.7
GTEX-1497J-0726-SM-5Q5D1
60-69 years, male
345.9
GTEX-UPK5-1426-SM-4JBHH
40-49 years, male
345.0
GTEX-1399T-0826-SM-5IFES
60-69 years, male
343.4
GTEX-S33H-1626-SM-4AD68
30-39 years, male
339.8
GTEX-RN64-1826-SM-48FDV
50-59 years, male
335.7
GTEX-13VXU-0926-SM-5IFFH
50-59 years, male
335.5
GTEX-ZAB5-0426-SM-5CVMI
50-59 years, male
334.3
GTEX-T6MN-1226-SM-3NMA5
50-59 years, male
329.2
GTEX-11WQC-0726-SM-5EQMR
60-69 years, male
328.0
GTEX-ZZPU-0426-SM-5GZYH
50-59 years, female
327.9
GTEX-Q734-0326-SM-48U15
40-49 years, female
327.4
GTEX-11OF3-0726-SM-5BC4Z
60-69 years, male
326.3
GTEX-VUSG-0126-SM-4KL1X
50-59 years, male
325.2
GTEX-13PVR-0126-SM-5S2PY
60-69 years, female
321.8
GTEX-147JS-1126-SM-5RQIW
60-69 years, male
319.5
GTEX-13NYB-1026-SM-5IFH3
40-49 years, male
318.7
GTEX-QEG4-1826-SM-4R1JN
30-39 years, male
317.0
GTEX-X3Y1-2726-SM-4PQZH
40-49 years, male
316.2
GTEX-11ZVC-0726-SM-5FQT9
50-59 years, female
315.0
GTEX-14753-1626-SM-5NQ9L
60-69 years, male
314.2
GTEX-12WSD-1426-SM-5GCN9
60-69 years, female
310.4
GTEX-1212Z-0226-SM-59HLF
60-69 years, male
309.8
GTEX-ZVT3-1626-SM-5GU66
60-69 years, female
299.6
GTEX-WYVS-1926-SM-4PQZ2
40-49 years, female
294.6
GTEX-14DAQ-1726-SM-5S2R2
60-69 years, female
290.9
GTEX-139TU-0826-SM-5IJFG
60-69 years, male
290.4
GTEX-139YR-0226-SM-5IFEM
50-59 years, male
289.9
GTEX-11DXZ-0126-SM-5EGGY
50-59 years, male
289.8
GTEX-YEC4-0826-SM-5P9FV
40-49 years, male
285.0
GTEX-11DXY-0526-SM-5EGGQ
60-69 years, male
281.8
GTEX-WFON-1726-SM-4LVMQ
40-49 years, male
280.3
GTEX-11NV4-1326-SM-5HL6V
60-69 years, male
279.9
GTEX-11NUK-1226-SM-5P9GM
50-59 years, male
277.1
GTEX-131YS-1626-SM-5HL6C
60-69 years, female
273.3
GTEX-12696-0826-SM-5EGGE
60-69 years, male
271.8
GTEX-13O3O-1826-SM-5IFGW
60-69 years, female
271.8
GTEX-13FTZ-0726-SM-5IFFY
60-69 years, male
266.3
GTEX-ZTPG-1426-SM-51MT3
20-29 years, female
264.0
GTEX-SJXC-1226-SM-4DM78
60-69 years, male
257.9
GTEX-RNOR-1426-SM-48FDJ
50-59 years, female
254.6
GTEX-14A5I-1726-SM-5QGQ5
50-59 years, female
254.5
GTEX-Y5V5-0926-SM-4VBPZ
60-69 years, female
253.1
GTEX-S32W-1926-SM-4AD63
50-59 years, female
250.6
GTEX-12WSL-0226-SM-5CVMJ
50-59 years, male
245.4
GTEX-12WSI-0226-SM-5GCNA
50-59 years, male
242.9
GTEX-13N2G-0926-SM-5IFGJ
60-69 years, male
238.9
GTEX-X261-1726-SM-4PQYT
50-59 years, male
238.8
GTEX-12WSG-0626-SM-5FQTQ
50-59 years, female
237.7
GTEX-ZVT4-0626-SM-5E45T
50-59 years, female
236.9
GTEX-XBEC-1526-SM-4AT68
50-59 years, male
233.8
GTEX-131XH-0626-SM-5LZWH
50-59 years, male
232.5
GTEX-X4EP-1026-SM-4QAS5
60-69 years, female
231.3
GTEX-ZAB4-0826-SM-5LU9D
40-49 years, male
226.3
GTEX-11ZTS-1426-SM-5EQMM
60-69 years, female
225.8
GTEX-RWSA-1426-SM-47JXA
40-49 years, male
225.6
GTEX-13112-1426-SM-5EGH8
50-59 years, male
222.3
GTEX-13QJC-0726-SM-5RQJK
60-69 years, female
219.4
GTEX-12WSM-0726-SM-5GCOW
60-69 years, male
215.4
GTEX-145LU-1326-SM-5LU9N
50-59 years, male
203.0
GTEX-11ZUS-2526-SM-59872
30-39 years, male
200.3
GTEX-11GSP-0626-SM-5986T
60-69 years, female
199.5
GTEX-WZTO-0626-SM-4PQYY
40-49 years, male
198.7
GTEX-S4Z8-0526-SM-4AD4T
60-69 years, male
198.3
GTEX-13NZB-0626-SM-5IFH6
30-39 years, male
190.8
GTEX-144GM-1326-SM-5LU5E
20-29 years, male
184.3
GTEX-Q2AG-1126-SM-48U1P
40-49 years, female
173.4
GTEX-131XE-0326-SM-5LZVO
50-59 years, male
167.1
GTEX-X4XY-1626-SM-46MVN
60-69 years, male
155.0
GTEX-QDVN-0826-SM-48TZ2
50-59 years, male
146.6
GTEX-12ZZZ-1326-SM-59HKW
60-69 years, male
76.6
GTEX-14C38-1526-SM-5RQJ7
50-59 years, male
76.1
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.