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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 116.4
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 122.4
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 99.3
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 82.8
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 66.1
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 44.5
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 136.8
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 74.8
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 208.5
Min RPKM: 13.4
Std RPKM: 42.2
Median RPKM: 106.4
GTEX-Q734-0326-SM-48U15
40-49 years, female
208.5
GTEX-ZF2S-3026-SM-4WWCH
50-59 years, female
206.9
GTEX-ZPU1-0826-SM-57WG2
40-49 years, male
192.1
GTEX-R53T-0326-SM-48FEC
50-59 years, female
183.0
GTEX-1399R-1226-SM-5P9GF
30-39 years, male
180.4
GTEX-ZZPU-0426-SM-5GZYH
50-59 years, female
179.5
GTEX-S4Z8-0526-SM-4AD4T
60-69 years, male
178.9
GTEX-UPK5-1426-SM-4JBHH
40-49 years, male
177.9
GTEX-ZAB5-0426-SM-5CVMI
50-59 years, male
177.8
GTEX-TKQ2-1726-SM-4DXUP
50-59 years, male
176.8
GTEX-PX3G-0826-SM-48TZS
20-29 years, female
175.2
GTEX-QV44-0326-SM-4R1KD
50-59 years, male
169.4
GTEX-144GM-1326-SM-5LU5E
20-29 years, male
168.5
GTEX-VUSG-0126-SM-4KL1X
50-59 years, male
167.5
GTEX-WYVS-1926-SM-4PQZ2
40-49 years, female
166.2
GTEX-139YR-0226-SM-5IFEM
50-59 years, male
164.2
GTEX-OOBJ-0826-SM-3NB2K
60-69 years, male
161.5
GTEX-X3Y1-2726-SM-4PQZH
40-49 years, male
159.9
GTEX-11DXZ-0126-SM-5EGGY
50-59 years, male
159.4
GTEX-13SLX-1226-SM-5S2Q6
50-59 years, female
157.5
GTEX-14E1K-0326-SM-5S2PE
50-59 years, male
155.2
GTEX-ZF29-2026-SM-4WWB7
60-69 years, female
152.6
GTEX-14DAQ-1726-SM-5S2R2
60-69 years, female
151.5
GTEX-WFON-1726-SM-4LVMQ
40-49 years, male
150.6
GTEX-P78B-1326-SM-3P611
40-49 years, female
148.8
GTEX-QDVN-0826-SM-48TZ2
50-59 years, male
146.6
GTEX-132NY-0926-SM-5P9G3
60-69 years, male
143.9
GTEX-S33H-1626-SM-4AD68
30-39 years, male
140.3
GTEX-12KS4-1326-SM-5LUB3
30-39 years, male
138.9
GTEX-13FTW-1126-SM-5J2NV
40-49 years, male
138.5
GTEX-Z9EW-0426-SM-5CVM9
40-49 years, male
137.6
GTEX-11EQ9-0526-SM-5A5JZ
30-39 years, male
137.0
GTEX-139TS-1426-SM-5IFJD
60-69 years, male
136.2
GTEX-YB5E-0326-SM-5IFHU
40-49 years, male
134.8
GTEX-ZVP2-0626-SM-51MSO
50-59 years, male
133.2
GTEX-RM2N-1926-SM-48FCU
50-59 years, male
132.1
GTEX-1212Z-0226-SM-59HLF
60-69 years, male
130.7
GTEX-WQUQ-1926-SM-4OOSA
60-69 years, male
129.5
GTEX-UPIC-0926-SM-4IHLV
20-29 years, female
128.9
GTEX-13113-1326-SM-5GCOI
60-69 years, female
127.3
GTEX-ZTPG-1426-SM-51MT3
20-29 years, female
127.1
GTEX-U3ZN-0226-SM-3DB8D
30-39 years, female
124.7
GTEX-Y5V5-0926-SM-4VBPZ
60-69 years, female
123.4
GTEX-146FH-1526-SM-5NQBU
50-59 years, female
123.3
GTEX-12WSL-0226-SM-5CVMJ
50-59 years, male
121.3
GTEX-13NZ9-1326-SM-5MR3V
50-59 years, male
119.0
GTEX-YEC4-0826-SM-5P9FV
40-49 years, male
118.2
GTEX-13PVR-0126-SM-5S2PY
60-69 years, female
116.4
GTEX-XOTO-0826-SM-4B65O
50-59 years, male
116.1
GTEX-Y5LM-0426-SM-4VBRO
40-49 years, female
115.2
GTEX-13FLV-0326-SM-5N9DJ
50-59 years, male
114.6
GTEX-X4EP-1026-SM-4QAS5
60-69 years, female
113.6
GTEX-12WSG-0626-SM-5FQTQ
50-59 years, female
112.7
GTEX-131XE-0326-SM-5LZVO
50-59 years, male
112.1
GTEX-145MF-0826-SM-5QGQA
50-59 years, male
110.8
GTEX-11WQC-0726-SM-5EQMR
60-69 years, male
108.2
GTEX-12WSD-1426-SM-5GCN9
60-69 years, female
107.4
GTEX-14AS3-0126-SM-5Q5F4
40-49 years, female
107.1
GTEX-1399T-0826-SM-5IFES
60-69 years, male
106.4
GTEX-145MO-2326-SM-5NQ9K
60-69 years, male
106.4
GTEX-ZYY3-0626-SM-5NQ6W
60-69 years, female
105.9
GTEX-UTHO-2426-SM-4JBHD
60-69 years, male
104.0
GTEX-YFC4-1526-SM-5IFJS
40-49 years, female
103.6
GTEX-QEL4-1226-SM-447A4
50-59 years, male
102.5
GTEX-13N11-0926-SM-5IJG2
50-59 years, female
101.7
GTEX-RTLS-1326-SM-46MUN
60-69 years, female
100.4
GTEX-14753-1626-SM-5NQ9L
60-69 years, male
100.3
GTEX-QESD-2026-SM-447BI
20-29 years, male
100.2
GTEX-139TU-0826-SM-5IJFG
60-69 years, male
99.8
GTEX-147JS-1126-SM-5RQIW
60-69 years, male
99.5
GTEX-ZYT6-0626-SM-5E45V
30-39 years, male
97.8
GTEX-REY6-1226-SM-48FDR
60-69 years, male
97.6
GTEX-S32W-1926-SM-4AD63
50-59 years, female
95.8
GTEX-1497J-0726-SM-5Q5D1
60-69 years, male
94.9
GTEX-13NZB-0626-SM-5IFH6
30-39 years, male
93.6
GTEX-RU72-1426-SM-46MUF
50-59 years, female
90.0
GTEX-ZVT3-1626-SM-5GU66
60-69 years, female
84.1
GTEX-11DXY-0526-SM-5EGGQ
60-69 years, male
79.5
GTEX-14A5I-1726-SM-5QGQ5
50-59 years, female
78.9
GTEX-X4XY-1626-SM-46MVN
60-69 years, male
78.7
GTEX-YECK-1926-SM-4W21H
60-69 years, male
78.4
GTEX-X261-1726-SM-4PQYT
50-59 years, male
78.0
GTEX-13OW6-2626-SM-5IFF2
50-59 years, male
77.5
GTEX-11ZTS-1426-SM-5EQMM
60-69 years, female
77.2
GTEX-ZAB4-0826-SM-5LU9D
40-49 years, male
77.1
GTEX-12696-0826-SM-5EGGE
60-69 years, male
75.5
GTEX-13N2G-0926-SM-5IFGJ
60-69 years, male
74.2
GTEX-RWSA-1426-SM-47JXA
40-49 years, male
73.3
GTEX-QEG4-1826-SM-4R1JN
30-39 years, male
73.0
GTEX-RN64-1826-SM-48FDV
50-59 years, male
72.7
GTEX-XBEC-1526-SM-4AT68
50-59 years, male
72.5
GTEX-11ZVC-0726-SM-5FQT9
50-59 years, female
72.1
GTEX-1269C-0626-SM-5FQSS
60-69 years, female
71.2
GTEX-SJXC-1226-SM-4DM78
60-69 years, male
70.2
GTEX-13QJC-0726-SM-5RQJK
60-69 years, female
69.8
GTEX-11NUK-1226-SM-5P9GM
50-59 years, male
69.1
GTEX-Q2AG-1126-SM-48U1P
40-49 years, female
68.5
GTEX-ZVT4-0626-SM-5E45T
50-59 years, female
66.6
GTEX-11OF3-0726-SM-5BC4Z
60-69 years, male
66.5
GTEX-14C38-1526-SM-5RQJ7
50-59 years, male
64.2
GTEX-147F4-1426-SM-5LUA8
50-59 years, male
63.4
GTEX-11NV4-1326-SM-5HL6V
60-69 years, male
61.3
GTEX-X4EO-1126-SM-4QARQ
60-69 years, female
60.0
GTEX-13NYB-1026-SM-5IFH3
40-49 years, male
58.8
GTEX-13VXU-0926-SM-5IFFH
50-59 years, male
58.4
GTEX-RNOR-1426-SM-48FDJ
50-59 years, female
57.5
GTEX-T6MN-1226-SM-3NMA5
50-59 years, male
55.6
GTEX-131YS-1626-SM-5HL6C
60-69 years, female
55.5
GTEX-11GSP-0626-SM-5986T
60-69 years, female
55.1
GTEX-12WSM-0726-SM-5GCOW
60-69 years, male
54.9
GTEX-12WSI-0226-SM-5GCNA
50-59 years, male
52.3
GTEX-11ZUS-2526-SM-59872
30-39 years, male
52.2
GTEX-13FTZ-0726-SM-5IFFY
60-69 years, male
51.6
GTEX-131XH-0626-SM-5LZWH
50-59 years, male
51.0
GTEX-WZTO-0626-SM-4PQYY
40-49 years, male
48.5
GTEX-145LU-1326-SM-5LU9N
50-59 years, male
48.3
GTEX-13O3O-1826-SM-5IFGW
60-69 years, female
42.0
GTEX-13112-1426-SM-5EGH8
50-59 years, male
34.0
GTEX-12ZZZ-1326-SM-59HKW
60-69 years, male
13.4
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.