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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 232.4
Min RPKM: 0.3
Std RPKM: 54.1
Median RPKM: 51.3
GTEX-111YS-1426-SM-5GID8
60-69 years, male
232.4
GTEX-ZPCL-1726-SM-57WEO
60-69 years, female
172.2
GTEX-Y9LG-1626-SM-5IFHM
30-39 years, male
165.2
GTEX-YB5E-1526-SM-5IFIE
40-49 years, male
164.8
GTEX-YEC4-1726-SM-4W21E
40-49 years, male
164.0
GTEX-YF7O-1826-SM-5IFIU
50-59 years, male
161.6
GTEX-ZLV1-1126-SM-4WWBW
60-69 years, female
148.8
GTEX-ZTSS-0926-SM-59865
40-49 years, male
146.9
GTEX-13D11-0726-SM-5LZZB
50-59 years, female
145.8
GTEX-14DAR-1426-SM-5RQIR
50-59 years, male
143.0
GTEX-ZVZP-1826-SM-5GZXB
50-59 years, male
139.2
GTEX-1122O-1326-SM-5H11F
60-69 years, female
138.2
GTEX-XUZC-1426-SM-4BRV3
30-39 years, female
138.0
GTEX-11P7K-1626-SM-5GU63
30-39 years, male
131.5
GTEX-13PL7-2626-SM-5IFH4
60-69 years, female
127.1
GTEX-11EQ9-1326-SM-5985X
30-39 years, male
124.3
GTEX-ZYFG-2026-SM-5E43Y
60-69 years, female
120.1
GTEX-XXEK-1026-SM-4BRUW
50-59 years, male
117.6
GTEX-X5EB-1626-SM-4E3IV
40-49 years, male
111.2
GTEX-14E6E-1626-SM-5RQI7
30-39 years, male
108.2
GTEX-145LT-1026-SM-5LU9O
40-49 years, male
107.9
GTEX-ZXES-1526-SM-5NQ95
30-39 years, female
105.1
GTEX-11I78-1126-SM-5A5K5
50-59 years, female
104.3
GTEX-ZTX8-0526-SM-59HLD
20-29 years, male
102.1
GTEX-11DXX-1626-SM-5H11H
60-69 years, female
100.5
GTEX-13113-1226-SM-5EGHT
60-69 years, female
98.8
GTEX-ZZ64-0526-SM-5GZXM
20-29 years, male
98.2
GTEX-XBED-1426-SM-4AT4G
60-69 years, male
94.7
GTEX-131XF-1326-SM-5GCMQ
60-69 years, male
89.5
GTEX-1399S-2026-SM-5KM4B
30-39 years, female
89.0
GTEX-13FTW-2026-SM-5IJE2
40-49 years, male
80.1
GTEX-ZA64-1226-SM-5HL7B
20-29 years, male
73.0
GTEX-13FH7-1226-SM-5IJFK
50-59 years, female
71.4
GTEX-11P82-0826-SM-5P9GU
20-29 years, male
70.4
GTEX-ZLFU-1526-SM-4WWBT
40-49 years, male
69.1
GTEX-ZVP2-1726-SM-5GU5P
50-59 years, male
68.4
GTEX-WFJO-0926-SM-4LVM2
30-39 years, male
67.3
GTEX-ZPIC-2326-SM-57WDW
40-49 years, female
66.8
GTEX-11DXZ-1326-SM-5H11X
50-59 years, male
65.9
GTEX-ZYWO-1526-SM-5SIAL
40-49 years, female
60.5
GTEX-11XUK-1426-SM-5EQMG
40-49 years, female
56.8
GTEX-ZEX8-1826-SM-57WBH
50-59 years, male
55.5
GTEX-WQUQ-2426-SM-4MVNW
60-69 years, male
54.2
GTEX-ZTPG-2626-SM-57WFX
20-29 years, female
53.0
GTEX-139T6-1026-SM-5IJGC
50-59 years, male
49.5
GTEX-13CF3-1226-SM-5LZXN
60-69 years, female
49.1
GTEX-12BJ1-1926-SM-5HL9Z
60-69 years, male
48.2
GTEX-133LE-1426-SM-5IFH1
20-29 years, female
47.4
GTEX-XGQ4-1326-SM-4GIDU
50-59 years, male
46.4
GTEX-13O61-1326-SM-5KM31
60-69 years, male
44.1
GTEX-11NSD-1726-SM-5N9C3
20-29 years, male
43.4
GTEX-Y114-1426-SM-4TT6W
50-59 years, female
42.8
GTEX-139YR-2226-SM-5IFFW
50-59 years, male
42.2
GTEX-ZVT2-2126-SM-5NQ93
50-59 years, female
40.6
GTEX-WH7G-1626-SM-4LVMY
40-49 years, male
37.6
GTEX-1399R-2026-SM-5K7WN
30-39 years, male
36.8
GTEX-WFG7-1726-SM-4LVME
20-29 years, male
35.1
GTEX-VJYA-0926-SM-4KL1N
60-69 years, male
34.8
GTEX-13RTK-0826-SM-5Q5C6
20-29 years, male
33.7
GTEX-XAJ8-0526-SM-47JYK
40-49 years, male
28.6
GTEX-Y3IK-1726-SM-4YCCR
50-59 years, female
24.5
GTEX-WRHK-1026-SM-4MVOD
20-29 years, female
24.0
GTEX-13O21-1026-SM-5IJDU
50-59 years, male
21.0
GTEX-11VI4-1626-SM-5EQKO
40-49 years, female
20.5
GTEX-1399U-2126-SM-5IFEZ
50-59 years, female
18.7
GTEX-Z9EW-0926-SM-5CVMM
40-49 years, male
16.5
GTEX-Y5LM-1626-SM-4VDTB
40-49 years, female
11.3
GTEX-X15G-1426-SM-4PQZK
50-59 years, female
10.6
GTEX-ZP4G-1626-SM-57WGD
20-29 years, female
8.6
GTEX-13OVI-1926-SM-5IJCG
60-69 years, female
7.1
GTEX-145ME-0926-SM-5O9AR
40-49 years, female
7.1
GTEX-12WSK-1526-SM-5CVNO
40-49 years, female
6.9
GTEX-ZQUD-0926-SM-57WE3
30-39 years, male
6.4
GTEX-ZF2S-1726-SM-57WFT
50-59 years, female
6.2
GTEX-111CU-1326-SM-5NQ8L
50-59 years, male
5.6
GTEX-WFG8-1626-SM-4LVMB
20-29 years, male
5.1
GTEX-13QBU-1926-SM-5IJEW
40-49 years, female
4.4
GTEX-131XG-1726-SM-5LZUR
50-59 years, female
3.5
GTEX-ZQG8-2526-SM-57WEQ
60-69 years, female
2.2
GTEX-148VJ-2226-SM-5NQ9M
70-79 years, male
2.1
GTEX-117YX-0326-SM-5GICL
50-59 years, male
1.6
GTEX-VUSG-1726-SM-4KKZL
50-59 years, male
1.6
GTEX-WEY5-1526-SM-4LMJF
40-49 years, female
1.2
GTEX-13111-1426-SM-5DUW3
50-59 years, male
0.9
GTEX-UPK5-2026-SM-4JBIM
40-49 years, male
0.6
GTEX-XMK1-1826-SM-4B66F
40-49 years, male
0.5
GTEX-ZC5H-2326-SM-4WAYT
40-49 years, female
0.4
GTEX-1192X-2526-SM-59868
50-59 years, male
0.3
Show all
SMALL INTESTINE - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.