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COLON - Expression summary
RNA expressioni
HPA:16.2TPM
GTEx:10.6RPKM
FANTOM5:64.3Tags Per Million

COLON - Annotated protein expression
Pending normal tissue analysis

COLON - HPA RNA-seqi
Average TPM 16.2
overview Male, age 54 Sample 1
TPM: 22
Cell types%
Glandular cells: 65
Smooth muscle cells: 10
Other cell types: 25
overview Female, age 57 Sample 2
TPM: 17.4
Cell types%
Glandular cells: 40
Smooth muscle cells: 5
Other cell types: 55
overview Male, age 80 Sample 3
TPM: 11.7
Cell types%
Glandular cells: 55
Smooth muscle cells: 5
Other cell types: 40
overview Male, age 68 Sample 4
TPM: 20.5
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 68 Sample 5
TPM: 11.8
Cell types%
Glandular cells: 25
Smooth muscle cells: 5
Other cell types: 70
overview Female, age 61 Sample 6
TPM: 16.9
Cell types%
Glandular cells: 5
Smooth muscle cells: 65
Other cell types: 30
overview Male, age 80 Sample 7
TPM: 12.4
Cell types%
Glandular cells: 15
Smooth muscle cells: 20
Other cell types: 65
overview Female, age 78 Sample 8
TPM: 15
Cell types%
Glandular cells: 45
Smooth muscle cells: 5
Other cell types: 50
overview Male, age 84 Sample 9
TPM: 19
Cell types%
Glandular cells: 50
Smooth muscle cells: 15
Other cell types: 35
overview Male, age 80 Sample 10
TPM: 13.9
Cell types%
Glandular cells: 20
Smooth muscle cells: 35
Other cell types: 45
overview Female, age 78 Sample 11
TPM: 20.8
Cell types%
Glandular cells: 35
Smooth muscle cells: 10
Other cell types: 55
overview Female, age 69 Sample 12
TPM: 17.2
Cell types%
Glandular cells: 10
Smooth muscle cells: 45
Other cell types: 45
overview Female, age 72 Sample 13
TPM: 12
Cell types%
Glandular cells: 20
Smooth muscle cells: 15
Other cell types: 65

COLON - GTEx RNA-seqi
Average RPKM 10.6
GTEx sample id Sample description RPKM
Colon - Sigmoid
RPKM: 13.0
Samples: 149

Max RPKM: 24.8
Min RPKM: 5.7
Std RPKM: 2.5
Median RPKM: 12.8
GTEX-11WQK-2526-SM-5CVL8 50-59 years, male 24.8
GTEX-14E6E-1726-SM-5S2R6 30-39 years, male 19.8
GTEX-13VXT-2026-SM-5L3EW 20-29 years, female 19.2
GTEX-ZPCL-1626-SM-57WGC 60-69 years, female 18.7
GTEX-ZXES-1726-SM-5E43G 30-39 years, female 18.5
GTEX-ZTSS-1226-SM-51MSZ 40-49 years, male 17.9
GTEX-YJ8A-1726-SM-5P9IQ 20-29 years, male 17.8
GTEX-14C5O-2626-SM-5RQI5 60-69 years, male 17.7
GTEX-ZYT6-2826-SM-5GICX 30-39 years, male 17.7
GTEX-XAJ8-0726-SM-47JY5 40-49 years, male 17.6
Show all
Colon - Transverse
RPKM: 8.7
Samples: 196

Max RPKM: 19.2
Min RPKM: 3.7
Std RPKM: 3.4
Median RPKM: 7.9
GTEX-11TTK-2426-SM-5PNYO 60-69 years, female 19.2
GTEX-14AS3-1126-SM-5Q5CR 40-49 years, female 19.0
GTEX-11WQK-2126-SM-5EQME 50-59 years, male 18.0
GTEX-13CF3-1426-SM-5K7YY 60-69 years, female 17.0
GTEX-145LS-2726-SM-5Q5D8 60-69 years, female 16.7
GTEX-Z93S-2426-SM-5HL8N 50-59 years, male 16.0
GTEX-13O3P-2326-SM-5KM55 50-59 years, male 15.8
GTEX-111YS-1626-SM-5GZZ9 60-69 years, male 15.6
GTEX-V955-1626-SM-4JBHJ 60-69 years, male 15.2
GTEX-ZV6S-1226-SM-59HLH 40-49 years, female 15.0
Show all

COLON - FANTOM5 CAGEi
Average Tags Per Million 64.3
FANTOM5 sample id Sample description Tags Per Million
Colon
Tags Per Million: 50.1
FF:10014-101C5 62,83,84 years, mixed 64.3

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The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg foundation.