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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 1054.6
Min RPKM: 0.8
Std RPKM: 229.4
Median RPKM: 265.6
GTEX-ZVT2-0626-SM-5GICR
50-59 years, female
1054.6
GTEX-11I78-2026-SM-5987C
50-59 years, female
998.7
GTEX-11P81-2126-SM-5HL6N
30-39 years, female
725.5
GTEX-X15G-1926-SM-4PQZQ
50-59 years, female
685.9
GTEX-11EMC-1926-SM-5A5JU
60-69 years, female
654.3
GTEX-S7SF-1426-SM-4AT5A
20-29 years, female
654.2
GTEX-ZZPU-2226-SM-5EGIV
50-59 years, female
653.4
GTEX-N7MT-1926-SM-3LK5N
60-69 years, female
602.2
GTEX-11TTK-2726-SM-5GU58
60-69 years, female
594.4
GTEX-1399U-1526-SM-5J2N7
50-59 years, female
593.5
GTEX-11XUK-1326-SM-5EQM4
40-49 years, female
585.2
GTEX-ZLWG-1126-SM-4WWFQ
50-59 years, female
563.9
GTEX-131XG-2126-SM-5DUXG
50-59 years, female
533.9
GTEX-XUJ4-1626-SM-4BONV
60-69 years, female
532.3
GTEX-QCQG-1226-SM-48U23
50-59 years, female
523.6
GTEX-11DXX-1726-SM-5H11T
60-69 years, female
482.7
GTEX-QVJO-2526-SM-4R1KB
60-69 years, female
472.8
GTEX-ZC5H-2226-SM-4WAWS
40-49 years, female
472.4
GTEX-13PVR-1426-SM-5S2PW
60-69 years, female
470.5
GTEX-NL3G-2526-SM-4SOIE
60-69 years, female
457.8
GTEX-1399S-2326-SM-5K7YV
30-39 years, female
449.8
GTEX-14AS3-1726-SM-5RQJV
40-49 years, female
418.0
GTEX-P78B-2226-SM-3P5ZZ
40-49 years, female
415.3
GTEX-U3ZN-0926-SM-4DXTU
30-39 years, female
409.8
GTEX-113JC-1926-SM-5N9GE
50-59 years, female
407.2
GTEX-TMMY-1926-SM-4DXUU
40-49 years, female
400.9
GTEX-13PL7-2726-SM-5L3GB
60-69 years, female
381.1
GTEX-ZAJG-2926-SM-5HL8P
50-59 years, female
372.7
GTEX-1117F-2526-SM-5GZY6
60-69 years, female
368.8
GTEX-P4PP-2526-SM-3P61P
30-39 years, female
367.8
GTEX-Y8LW-1426-SM-5RQJJ
50-59 years, female
367.3
GTEX-12WSB-2426-SM-5EGJC
60-69 years, female
366.3
GTEX-145ME-1426-SM-5RQJS
40-49 years, female
366.0
GTEX-ZP4G-0826-SM-4WWF3
20-29 years, female
362.7
GTEX-Y3IK-2226-SM-4YCD4
50-59 years, female
361.4
GTEX-132AR-1626-SM-5EGHP
50-59 years, female
361.3
GTEX-PX3G-2526-SM-48TZV
20-29 years, female
359.6
GTEX-YJ8O-1226-SM-5P9JE
40-49 years, female
349.2
GTEX-ZE7O-2426-SM-57WD7
50-59 years, female
344.7
GTEX-UPIC-1426-SM-4IHLQ
20-29 years, female
337.4
GTEX-11VI4-0726-SM-5GU5B
40-49 years, female
328.1
GTEX-PWCY-1726-SM-48TD3
20-29 years, female
325.6
GTEX-PWN1-2526-SM-48TDS
40-49 years, female
290.9
GTEX-ZYY3-2626-SM-5N9DH
60-69 years, female
288.2
GTEX-SE5C-1126-SM-4BRWZ
40-49 years, female
279.7
GTEX-146FH-2626-SM-5Q5E1
50-59 years, female
275.1
GTEX-OHPK-2526-SM-3MJH9
50-59 years, female
274.1
GTEX-S4P3-1126-SM-4AD52
50-59 years, female
273.3
GTEX-TML8-1126-SM-4DXSS
40-49 years, female
257.8
GTEX-ZXES-0626-SM-5E45P
30-39 years, female
246.4
GTEX-X8HC-2826-SM-46MWJ
50-59 years, female
233.4
GTEX-13D11-1326-SM-5IJFY
50-59 years, female
216.6
GTEX-S341-1226-SM-4AD5S
40-49 years, female
196.4
GTEX-OHPL-2526-SM-3MJGT
60-69 years, female
192.3
GTEX-T6MO-1226-SM-4DM5S
40-49 years, female
189.8
GTEX-13QBU-1726-SM-5IJFQ
40-49 years, female
182.4
GTEX-ZTPG-2226-SM-57WF9
20-29 years, female
178.8
GTEX-XUW1-0326-SM-4BOOR
50-59 years, female
178.7
GTEX-PLZ4-2726-SM-3P61A
50-59 years, female
175.1
GTEX-13U4I-2026-SM-5LU3L
40-49 years, female
172.4
GTEX-14BMU-1926-SM-5S2QC
20-29 years, female
171.7
GTEX-146FR-2426-SM-5NQAU
60-69 years, female
156.7
GTEX-131YS-2426-SM-5J2OD
60-69 years, female
141.2
GTEX-13QIC-1826-SM-5J1MY
60-69 years, female
137.0
GTEX-RWS6-1726-SM-47JXP
60-69 years, female
133.8
GTEX-XV7Q-1626-SM-4BRWC
40-49 years, female
123.9
GTEX-14A5I-2726-SM-5SIB3
50-59 years, female
123.5
GTEX-T2IS-1926-SM-4DM74
20-29 years, female
121.5
GTEX-TSE9-2526-SM-4DXUS
60-69 years, female
118.4
GTEX-QDT8-2526-SM-48TYX
30-39 years, female
104.5
GTEX-14DAQ-2326-SM-5S2QX
60-69 years, female
102.1
GTEX-ZGAY-2226-SM-4YCCX
40-49 years, female
101.9
GTEX-PWOO-2026-SM-48TDE
40-49 years, female
100.7
GTEX-ZVT3-2726-SM-5GU5X
60-69 years, female
44.1
GTEX-ZYVF-0326-SM-5GIES
50-59 years, female
33.1
GTEX-S4UY-1326-SM-4AD4X
40-49 years, female
22.9
GTEX-UJHI-1326-SM-4IHJO
50-59 years, female
9.9
GTEX-147F3-1526-SM-5SIAK
50-59 years, female
9.2
GTEX-RU1J-1426-SM-46MUV
20-29 years, female
9.0
GTEX-ZYWO-2026-SM-5GIDA
40-49 years, female
8.3
GTEX-W5WG-1026-SM-4LMIF
50-59 years, female
7.4
GTEX-13N11-1526-SM-5L3FL
50-59 years, female
6.1
GTEX-Q734-1426-SM-48TZQ
40-49 years, female
4.6
GTEX-ZV6S-1326-SM-59HJA
40-49 years, female
3.9
GTEX-11EM3-1826-SM-5A5KO
20-29 years, female
3.8
GTEX-ZQG8-1126-SM-51MRL
60-69 years, female
3.6
GTEX-WEY5-0826-SM-4LMIH
40-49 years, female
3.5
GTEX-12WSD-2926-SM-5LZUH
60-69 years, female
3.3
GTEX-12ZZX-1926-SM-5EGKC
40-49 years, female
3.2
GTEX-Y114-1926-SM-4TT8J
50-59 years, female
2.9
GTEX-WRHU-2926-SM-4MVNQ
50-59 years, female
2.8
GTEX-12WSJ-1326-SM-5GCOB
40-49 years, female
2.7
GTEX-13W3W-2326-SM-5LU4Y
60-69 years, female
2.1
GTEX-13OVI-0926-SM-5J1MI
60-69 years, female
2.0
GTEX-11GSP-2226-SM-5HL5Q
60-69 years, female
1.4
GTEX-YFC4-2926-SM-5IFJ8
40-49 years, female
0.8
Show all
VAGINA - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.