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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 10127.2
Min RPKM: 0.6
Std RPKM: 2220.5
Median RPKM: 2069.3
GTEX-139T6-1026-SM-5IJGC
50-59 years, male
10127.2
GTEX-13RTK-0826-SM-5Q5C6
20-29 years, male
8207.9
GTEX-VJYA-0926-SM-4KL1N
60-69 years, male
8050.0
GTEX-13PL7-2626-SM-5IFH4
60-69 years, female
7289.5
GTEX-YB5E-1526-SM-5IFIE
40-49 years, male
7261.7
GTEX-145LT-1026-SM-5LU9O
40-49 years, male
7021.0
GTEX-ZQG8-2526-SM-57WEQ
60-69 years, female
6640.5
GTEX-ZA64-1226-SM-5HL7B
20-29 years, male
6539.4
GTEX-ZYFG-2026-SM-5E43Y
60-69 years, female
6407.8
GTEX-ZP4G-1626-SM-57WGD
20-29 years, female
5668.8
GTEX-YF7O-1826-SM-5IFIU
50-59 years, male
5480.6
GTEX-ZTSS-0926-SM-59865
40-49 years, male
5330.2
GTEX-XUZC-1426-SM-4BRV3
30-39 years, female
5316.7
GTEX-13O21-1026-SM-5IJDU
50-59 years, male
5294.7
GTEX-ZXES-1526-SM-5NQ95
30-39 years, female
5049.5
GTEX-XGQ4-1326-SM-4GIDU
50-59 years, male
4802.8
GTEX-XBED-1426-SM-4AT4G
60-69 years, male
4753.4
GTEX-11EQ9-1326-SM-5985X
30-39 years, male
4705.7
GTEX-13FTW-2026-SM-5IJE2
40-49 years, male
4349.7
GTEX-Y5LM-1626-SM-4VDTB
40-49 years, female
4292.4
GTEX-1122O-1326-SM-5H11F
60-69 years, female
4144.6
GTEX-133LE-1426-SM-5IFH1
20-29 years, female
4125.1
GTEX-11P7K-1626-SM-5GU63
30-39 years, male
3888.3
GTEX-X5EB-1626-SM-4E3IV
40-49 years, male
3693.6
GTEX-13D11-0726-SM-5LZZB
50-59 years, female
3436.5
GTEX-148VJ-2226-SM-5NQ9M
70-79 years, male
3372.6
GTEX-ZTX8-0526-SM-59HLD
20-29 years, male
3100.4
GTEX-1399U-2126-SM-5IFEZ
50-59 years, female
2944.3
GTEX-ZLV1-1126-SM-4WWBW
60-69 years, female
2824.6
GTEX-11DXX-1626-SM-5H11H
60-69 years, female
2739.5
GTEX-11I78-1126-SM-5A5K5
50-59 years, female
2681.6
GTEX-Y3IK-1726-SM-4YCCR
50-59 years, female
2626.7
GTEX-131XF-1326-SM-5GCMQ
60-69 years, male
2625.8
GTEX-11P82-0826-SM-5P9GU
20-29 years, male
2553.3
GTEX-13113-1226-SM-5EGHT
60-69 years, female
2523.3
GTEX-WFG7-1726-SM-4LVME
20-29 years, male
2363.8
GTEX-14DAR-1426-SM-5RQIR
50-59 years, male
2291.4
GTEX-WH7G-1626-SM-4LVMY
40-49 years, male
2263.7
GTEX-ZVZP-1826-SM-5GZXB
50-59 years, male
2246.1
GTEX-ZVT2-2126-SM-5NQ93
50-59 years, female
2206.2
GTEX-WFG8-1626-SM-4LVMB
20-29 years, male
2170.1
GTEX-X15G-1426-SM-4PQZK
50-59 years, female
2151.1
GTEX-14E6E-1626-SM-5RQI7
30-39 years, male
2126.7
GTEX-YEC4-1726-SM-4W21E
40-49 years, male
2081.9
GTEX-ZEX8-1826-SM-57WBH
50-59 years, male
2056.6
GTEX-11VI4-1626-SM-5EQKO
40-49 years, female
1952.6
GTEX-ZLFU-1526-SM-4WWBT
40-49 years, male
1910.6
GTEX-ZYWO-1526-SM-5SIAL
40-49 years, female
1901.8
GTEX-WRHK-1026-SM-4MVOD
20-29 years, female
1894.6
GTEX-145ME-0926-SM-5O9AR
40-49 years, female
1867.8
GTEX-11NSD-1726-SM-5N9C3
20-29 years, male
1666.3
GTEX-13CF3-1226-SM-5LZXN
60-69 years, female
1579.2
GTEX-XAJ8-0526-SM-47JYK
40-49 years, male
1517.5
GTEX-Z9EW-0926-SM-5CVMM
40-49 years, male
1495.9
GTEX-ZPCL-1726-SM-57WEO
60-69 years, female
1478.7
GTEX-139YR-2226-SM-5IFFW
50-59 years, male
1461.0
GTEX-131XG-1726-SM-5LZUR
50-59 years, female
1437.5
GTEX-Y114-1426-SM-4TT6W
50-59 years, female
1407.6
GTEX-ZZ64-0526-SM-5GZXM
20-29 years, male
1338.0
GTEX-WQUQ-2426-SM-4MVNW
60-69 years, male
1312.4
GTEX-ZPIC-2326-SM-57WDW
40-49 years, female
1282.4
GTEX-13O61-1326-SM-5KM31
60-69 years, male
1274.8
GTEX-11DXZ-1326-SM-5H11X
50-59 years, male
1269.0
GTEX-ZVP2-1726-SM-5GU5P
50-59 years, male
1261.4
GTEX-XXEK-1026-SM-4BRUW
50-59 years, male
1217.5
GTEX-11XUK-1426-SM-5EQMG
40-49 years, female
1172.7
GTEX-13QBU-1926-SM-5IJEW
40-49 years, female
1102.1
GTEX-12BJ1-1926-SM-5HL9Z
60-69 years, male
1084.7
GTEX-1399R-2026-SM-5K7WN
30-39 years, male
1075.7
GTEX-12WSK-1526-SM-5CVNO
40-49 years, female
970.9
GTEX-Y9LG-1626-SM-5IFHM
30-39 years, male
845.9
GTEX-13FH7-1226-SM-5IJFK
50-59 years, female
830.3
GTEX-111YS-1426-SM-5GID8
60-69 years, male
743.2
GTEX-ZTPG-2626-SM-57WFX
20-29 years, female
713.3
GTEX-1399S-2026-SM-5KM4B
30-39 years, female
514.5
GTEX-13111-1426-SM-5DUW3
50-59 years, male
484.9
GTEX-WEY5-1526-SM-4LMJF
40-49 years, female
479.3
GTEX-ZC5H-2326-SM-4WAYT
40-49 years, female
461.7
GTEX-WFJO-0926-SM-4LVM2
30-39 years, male
429.4
GTEX-VUSG-1726-SM-4KKZL
50-59 years, male
315.1
GTEX-1192X-2526-SM-59868
50-59 years, male
84.4
GTEX-13OVI-1926-SM-5IJCG
60-69 years, female
31.4
GTEX-UPK5-2026-SM-4JBIM
40-49 years, male
21.6
GTEX-XMK1-1826-SM-4B66F
40-49 years, male
17.4
GTEX-ZF2S-1726-SM-57WFT
50-59 years, female
7.2
GTEX-111CU-1326-SM-5NQ8L
50-59 years, male
5.3
GTEX-ZQUD-0926-SM-57WE3
30-39 years, male
1.4
GTEX-117YX-0326-SM-5GICL
50-59 years, male
0.6
Show all
SMALL INTESTINE - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.