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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 20867.1
Min RPKM: 2.1
Std RPKM: 4374.3
Median RPKM: 4455.0
GTEX-13RTK-0826-SM-5Q5C6
20-29 years, male
20867.1
GTEX-139T6-1026-SM-5IJGC
50-59 years, male
18009.4
GTEX-VJYA-0926-SM-4KL1N
60-69 years, male
16890.1
GTEX-ZA64-1226-SM-5HL7B
20-29 years, male
12816.0
GTEX-148VJ-2226-SM-5NQ9M
70-79 years, male
12757.7
GTEX-YB5E-1526-SM-5IFIE
40-49 years, male
12634.1
GTEX-XBED-1426-SM-4AT4G
60-69 years, male
12456.6
GTEX-13PL7-2626-SM-5IFH4
60-69 years, female
12412.4
GTEX-ZTSS-0926-SM-59865
40-49 years, male
12332.8
GTEX-ZQG8-2526-SM-57WEQ
60-69 years, female
12219.1
GTEX-ZYFG-2026-SM-5E43Y
60-69 years, female
11782.5
GTEX-XUZC-1426-SM-4BRV3
30-39 years, female
11253.4
GTEX-11P7K-1626-SM-5GU63
30-39 years, male
10508.9
GTEX-Y5LM-1626-SM-4VDTB
40-49 years, female
10269.9
GTEX-13FTW-2026-SM-5IJE2
40-49 years, male
10258.1
GTEX-145LT-1026-SM-5LU9O
40-49 years, male
10178.1
GTEX-XGQ4-1326-SM-4GIDU
50-59 years, male
10126.5
GTEX-13O21-1026-SM-5IJDU
50-59 years, male
9623.1
GTEX-133LE-1426-SM-5IFH1
20-29 years, female
9126.2
GTEX-ZXES-1526-SM-5NQ95
30-39 years, female
9061.7
GTEX-1122O-1326-SM-5H11F
60-69 years, female
8612.2
GTEX-13113-1226-SM-5EGHT
60-69 years, female
8456.5
GTEX-YF7O-1826-SM-5IFIU
50-59 years, male
8411.8
GTEX-ZTX8-0526-SM-59HLD
20-29 years, male
7547.7
GTEX-ZP4G-1626-SM-57WGD
20-29 years, female
7299.5
GTEX-X5EB-1626-SM-4E3IV
40-49 years, male
7240.8
GTEX-11EQ9-1326-SM-5985X
30-39 years, male
7127.6
GTEX-13D11-0726-SM-5LZZB
50-59 years, female
6628.3
GTEX-ZLFU-1526-SM-4WWBT
40-49 years, male
6379.9
GTEX-WFG8-1626-SM-4LVMB
20-29 years, male
6234.7
GTEX-11DXX-1626-SM-5H11H
60-69 years, female
6058.4
GTEX-ZLV1-1126-SM-4WWBW
60-69 years, female
5961.6
GTEX-11I78-1126-SM-5A5K5
50-59 years, female
5766.8
GTEX-13CF3-1226-SM-5LZXN
60-69 years, female
5637.4
GTEX-YEC4-1726-SM-4W21E
40-49 years, male
5440.4
GTEX-1399U-2126-SM-5IFEZ
50-59 years, female
5202.4
GTEX-131XF-1326-SM-5GCMQ
60-69 years, male
5075.7
GTEX-ZVZP-1826-SM-5GZXB
50-59 years, male
4962.4
GTEX-WFG7-1726-SM-4LVME
20-29 years, male
4754.1
GTEX-ZYWO-1526-SM-5SIAL
40-49 years, female
4752.6
GTEX-ZVT2-2126-SM-5NQ93
50-59 years, female
4740.1
GTEX-145ME-0926-SM-5O9AR
40-49 years, female
4718.0
GTEX-14DAR-1426-SM-5RQIR
50-59 years, male
4642.1
GTEX-Y3IK-1726-SM-4YCCR
50-59 years, female
4626.5
GTEX-11DXZ-1326-SM-5H11X
50-59 years, male
4283.4
GTEX-X15G-1426-SM-4PQZK
50-59 years, female
4269.7
GTEX-14E6E-1626-SM-5RQI7
30-39 years, male
4236.5
GTEX-WRHK-1026-SM-4MVOD
20-29 years, female
4161.7
GTEX-WH7G-1626-SM-4LVMY
40-49 years, male
4096.7
GTEX-ZPCL-1726-SM-57WEO
60-69 years, female
3949.4
GTEX-ZEX8-1826-SM-57WBH
50-59 years, male
3946.1
GTEX-Y114-1426-SM-4TT6W
50-59 years, female
3814.8
GTEX-XXEK-1026-SM-4BRUW
50-59 years, male
3702.3
GTEX-131XG-1726-SM-5LZUR
50-59 years, female
3565.8
GTEX-11P82-0826-SM-5P9GU
20-29 years, male
3546.6
GTEX-XAJ8-0526-SM-47JYK
40-49 years, male
3436.7
GTEX-139YR-2226-SM-5IFFW
50-59 years, male
3431.8
GTEX-ZPIC-2326-SM-57WDW
40-49 years, female
3300.7
GTEX-11NSD-1726-SM-5N9C3
20-29 years, male
3238.2
GTEX-WQUQ-2426-SM-4MVNW
60-69 years, male
3146.6
GTEX-ZZ64-0526-SM-5GZXM
20-29 years, male
3106.9
GTEX-11VI4-1626-SM-5EQKO
40-49 years, female
3084.7
GTEX-11XUK-1426-SM-5EQMG
40-49 years, female
2757.7
GTEX-13QBU-1926-SM-5IJEW
40-49 years, female
2696.4
GTEX-ZVP2-1726-SM-5GU5P
50-59 years, male
2555.8
GTEX-12BJ1-1926-SM-5HL9Z
60-69 years, male
2488.2
GTEX-111YS-1426-SM-5GID8
60-69 years, male
2480.7
GTEX-13FH7-1226-SM-5IJFK
50-59 years, female
2441.3
GTEX-13O61-1326-SM-5KM31
60-69 years, male
2411.0
GTEX-Z9EW-0926-SM-5CVMM
40-49 years, male
2386.5
GTEX-ZTPG-2626-SM-57WFX
20-29 years, female
1893.8
GTEX-Y9LG-1626-SM-5IFHM
30-39 years, male
1847.9
GTEX-12WSK-1526-SM-5CVNO
40-49 years, female
1781.8
GTEX-1399R-2026-SM-5K7WN
30-39 years, male
1648.6
GTEX-1399S-2026-SM-5KM4B
30-39 years, female
1372.1
GTEX-ZC5H-2326-SM-4WAYT
40-49 years, female
1361.9
GTEX-VUSG-1726-SM-4KKZL
50-59 years, male
1200.9
GTEX-13111-1426-SM-5DUW3
50-59 years, male
1047.1
GTEX-WEY5-1526-SM-4LMJF
40-49 years, female
913.3
GTEX-WFJO-0926-SM-4LVM2
30-39 years, male
762.9
GTEX-13OVI-1926-SM-5IJCG
60-69 years, female
211.7
GTEX-1192X-2526-SM-59868
50-59 years, male
175.0
GTEX-UPK5-2026-SM-4JBIM
40-49 years, male
50.5
GTEX-XMK1-1826-SM-4B66F
40-49 years, male
46.6
GTEX-ZF2S-1726-SM-57WFT
50-59 years, female
18.6
GTEX-111CU-1326-SM-5NQ8L
50-59 years, male
10.8
GTEX-ZQUD-0926-SM-57WE3
30-39 years, male
4.0
GTEX-117YX-0326-SM-5GICL
50-59 years, male
2.1
Show all
SMALL INTESTINE - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.