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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Hepatocytes: 80 Fibroblasts: 15 Other cell types: 5
Male, age 74
Sample 3 TPM: 545.7
Cell types%
Hepatocytes: 85 Fibroblasts: 5 Other cell types: 10
Female, age 62
Sample 4 TPM: 269.4
Cell types%
Hepatocytes: 70 Fibroblasts: 10 Other cell types: 20
Male, age 78
Sample 5 TPM: 251.5
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Male, age 53
Sample 6 TPM: 566.1
Cell types%
Hepatocytes: 80 Fibroblasts: 5 Other cell types: 15
Male, age 77
Sample 7 TPM: 626.2
Cell types%
Hepatocytes: 75 Fibroblasts: 5 Other cell types: 20
Female, age 72
Sample 8 TPM: 417
Cell types%
Hepatocytes: 50 Fibroblasts: 10 Other cell types: 40
Male, age 70
Sample 9 TPM: 411.2
Cell types%
Hepatocytes: 65 Fibroblasts: 10 Other cell types: 25
Female, age 23
Sample 10 TPM: 527.5
Cell types%
Hepatocytes: 70 Fibroblasts: 5 Other cell types: 25
LIVER - GTEx RNA-seqi
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 243.8
Min RPKM: 17.5
Std RPKM: 38.0
Median RPKM: 85.1
GTEX-Q734-0326-SM-48U15
40-49 years, female
243.8
GTEX-ZTPG-1426-SM-51MT3
20-29 years, female
223.7
GTEX-REY6-1226-SM-48FDR
60-69 years, male
187.9
GTEX-YB5E-0326-SM-5IFHU
40-49 years, male
187.5
GTEX-12WSG-0626-SM-5FQTQ
50-59 years, female
166.6
GTEX-1497J-0726-SM-5Q5D1
60-69 years, male
165.4
GTEX-QEL4-1226-SM-447A4
50-59 years, male
152.9
GTEX-ZYY3-0626-SM-5NQ6W
60-69 years, female
149.5
GTEX-WYVS-1926-SM-4PQZ2
40-49 years, female
147.4
GTEX-ZAB5-0426-SM-5CVMI
50-59 years, male
147.0
GTEX-S32W-1926-SM-4AD63
50-59 years, female
146.5
GTEX-UPK5-1426-SM-4JBHH
40-49 years, male
142.5
GTEX-QV44-0326-SM-4R1KD
50-59 years, male
140.5
GTEX-1399R-1226-SM-5P9GF
30-39 years, male
138.8
GTEX-R53T-0326-SM-48FEC
50-59 years, female
133.9
GTEX-139YR-0226-SM-5IFEM
50-59 years, male
132.9
GTEX-14DAQ-1726-SM-5S2R2
60-69 years, female
131.9
GTEX-13NZ9-1326-SM-5MR3V
50-59 years, male
131.4
GTEX-13FTW-1126-SM-5J2NV
40-49 years, male
130.7
GTEX-13N11-0926-SM-5IJG2
50-59 years, female
127.5
GTEX-UPIC-0926-SM-4IHLV
20-29 years, female
127.1
GTEX-ZF2S-3026-SM-4WWCH
50-59 years, female
125.9
GTEX-X4EP-1026-SM-4QAS5
60-69 years, female
122.0
GTEX-RTLS-1326-SM-46MUN
60-69 years, female
119.8
GTEX-QDVN-0826-SM-48TZ2
50-59 years, male
119.1
GTEX-ZAB4-0826-SM-5LU9D
40-49 years, male
116.8
GTEX-11ZTS-1426-SM-5EQMM
60-69 years, female
116.3
GTEX-X4XY-1626-SM-46MVN
60-69 years, male
114.8
GTEX-11DXZ-0126-SM-5EGGY
50-59 years, male
114.4
GTEX-S4Z8-0526-SM-4AD4T
60-69 years, male
114.4
GTEX-OOBJ-0826-SM-3NB2K
60-69 years, male
111.1
GTEX-PX3G-0826-SM-48TZS
20-29 years, female
109.9
GTEX-WFON-1726-SM-4LVMQ
40-49 years, male
109.1
GTEX-145MF-0826-SM-5QGQA
50-59 years, male
108.6
GTEX-ZYT6-0626-SM-5E45V
30-39 years, male
107.4
GTEX-Y5LM-0426-SM-4VBRO
40-49 years, female
106.2
GTEX-S33H-1626-SM-4AD68
30-39 years, male
103.4
GTEX-QESD-2026-SM-447BI
20-29 years, male
101.8
GTEX-QEG4-1826-SM-4R1JN
30-39 years, male
101.6
GTEX-13SLX-1226-SM-5S2Q6
50-59 years, female
99.3
GTEX-X4EO-1126-SM-4QARQ
60-69 years, female
98.8
GTEX-14AS3-0126-SM-5Q5F4
40-49 years, female
97.2
GTEX-14E1K-0326-SM-5S2PE
50-59 years, male
96.9
GTEX-VUSG-0126-SM-4KL1X
50-59 years, male
96.9
GTEX-131XE-0326-SM-5LZVO
50-59 years, male
96.5
GTEX-14C38-1526-SM-5RQJ7
50-59 years, male
96.0
GTEX-12KS4-1326-SM-5LUB3
30-39 years, male
93.5
GTEX-ZZPU-0426-SM-5GZYH
50-59 years, female
93.3
GTEX-UTHO-2426-SM-4JBHD
60-69 years, male
93.2
GTEX-ZF29-2026-SM-4WWB7
60-69 years, female
91.9
GTEX-P78B-1326-SM-3P611
40-49 years, female
89.1
GTEX-11EQ9-0526-SM-5A5JZ
30-39 years, male
88.7
GTEX-1212Z-0226-SM-59HLF
60-69 years, male
88.6
GTEX-Z9EW-0426-SM-5CVM9
40-49 years, male
87.1
GTEX-144GM-1326-SM-5LU5E
20-29 years, male
86.6
GTEX-11WQC-0726-SM-5EQMR
60-69 years, male
85.9
GTEX-X261-1726-SM-4PQYT
50-59 years, male
85.8
GTEX-XOTO-0826-SM-4B65O
50-59 years, male
85.8
GTEX-1399T-0826-SM-5IFES
60-69 years, male
85.6
GTEX-13FLV-0326-SM-5N9DJ
50-59 years, male
85.1
GTEX-12WSI-0226-SM-5GCNA
50-59 years, male
84.8
GTEX-12WSD-1426-SM-5GCN9
60-69 years, female
84.0
GTEX-139TS-1426-SM-5IFJD
60-69 years, male
83.7
GTEX-ZVT4-0626-SM-5E45T
50-59 years, female
82.7
GTEX-ZPU1-0826-SM-57WG2
40-49 years, male
82.0
GTEX-131YS-1626-SM-5HL6C
60-69 years, female
81.4
GTEX-11ZUS-2526-SM-59872
30-39 years, male
81.3
GTEX-13QJC-0726-SM-5RQJK
60-69 years, female
81.0
GTEX-12WSL-0226-SM-5CVMJ
50-59 years, male
78.8
GTEX-YECK-1926-SM-4W21H
60-69 years, male
78.5
GTEX-TKQ2-1726-SM-4DXUP
50-59 years, male
78.0
GTEX-RM2N-1926-SM-48FCU
50-59 years, male
77.9
GTEX-RWSA-1426-SM-47JXA
40-49 years, male
77.9
GTEX-11DXY-0526-SM-5EGGQ
60-69 years, male
77.8
GTEX-Y5V5-0926-SM-4VBPZ
60-69 years, female
77.0
GTEX-SJXC-1226-SM-4DM78
60-69 years, male
74.8
GTEX-ZVP2-0626-SM-51MSO
50-59 years, male
74.0
GTEX-RU72-1426-SM-46MUF
50-59 years, female
71.9
GTEX-RNOR-1426-SM-48FDJ
50-59 years, female
70.8
GTEX-147JS-1126-SM-5RQIW
60-69 years, male
70.7
GTEX-13NYB-1026-SM-5IFH3
40-49 years, male
69.4
GTEX-13113-1326-SM-5GCOI
60-69 years, female
68.5
GTEX-13OW6-2626-SM-5IFF2
50-59 years, male
67.7
GTEX-YFC4-1526-SM-5IFJS
40-49 years, female
66.4
GTEX-139TU-0826-SM-5IJFG
60-69 years, male
65.8
GTEX-11NUK-1226-SM-5P9GM
50-59 years, male
65.6
GTEX-13O3O-1826-SM-5IFGW
60-69 years, female
65.4
GTEX-13VXU-0926-SM-5IFFH
50-59 years, male
64.0
GTEX-146FH-1526-SM-5NQBU
50-59 years, female
64.0
GTEX-Q2AG-1126-SM-48U1P
40-49 years, female
63.8
GTEX-X3Y1-2726-SM-4PQZH
40-49 years, male
63.6
GTEX-11OF3-0726-SM-5BC4Z
60-69 years, male
62.3
GTEX-WQUQ-1926-SM-4OOSA
60-69 years, male
61.0
GTEX-13112-1426-SM-5EGH8
50-59 years, male
60.9
GTEX-ZVT3-1626-SM-5GU66
60-69 years, female
60.6
GTEX-RN64-1826-SM-48FDV
50-59 years, male
59.4
GTEX-132NY-0926-SM-5P9G3
60-69 years, male
59.0
GTEX-11NV4-1326-SM-5HL6V
60-69 years, male
58.7
GTEX-14A5I-1726-SM-5QGQ5
50-59 years, female
58.5
GTEX-T6MN-1226-SM-3NMA5
50-59 years, male
57.6
GTEX-U3ZN-0226-SM-3DB8D
30-39 years, female
57.6
GTEX-YEC4-0826-SM-5P9FV
40-49 years, male
57.1
GTEX-131XH-0626-SM-5LZWH
50-59 years, male
52.9
GTEX-12696-0826-SM-5EGGE
60-69 years, male
52.7
GTEX-WZTO-0626-SM-4PQYY
40-49 years, male
51.6
GTEX-XBEC-1526-SM-4AT68
50-59 years, male
50.9
GTEX-147F4-1426-SM-5LUA8
50-59 years, male
50.6
GTEX-14753-1626-SM-5NQ9L
60-69 years, male
49.8
GTEX-13N2G-0926-SM-5IFGJ
60-69 years, male
49.3
GTEX-13NZB-0626-SM-5IFH6
30-39 years, male
48.6
GTEX-13FTZ-0726-SM-5IFFY
60-69 years, male
48.5
GTEX-145LU-1326-SM-5LU9N
50-59 years, male
48.0
GTEX-12WSM-0726-SM-5GCOW
60-69 years, male
47.8
GTEX-11ZVC-0726-SM-5FQT9
50-59 years, female
46.5
GTEX-13PVR-0126-SM-5S2PY
60-69 years, female
44.1
GTEX-11GSP-0626-SM-5986T
60-69 years, female
43.7
GTEX-1269C-0626-SM-5FQSS
60-69 years, female
43.4
GTEX-145MO-2326-SM-5NQ9K
60-69 years, male
39.7
GTEX-12ZZZ-1326-SM-59HKW
60-69 years, male
17.5
Show all
LIVER - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.