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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 575.8
Min RPKM: 186.5
Std RPKM: 61.5
Median RPKM: 301.7
GTEX-ZE7O-2426-SM-57WD7
50-59 years, female
575.8
GTEX-Y8LW-1426-SM-5RQJJ
50-59 years, female
484.0
GTEX-1117F-2526-SM-5GZY6
60-69 years, female
414.9
GTEX-13D11-1326-SM-5IJFY
50-59 years, female
411.8
GTEX-PLZ4-2726-SM-3P61A
50-59 years, female
404.0
GTEX-11P81-2126-SM-5HL6N
30-39 years, female
403.5
GTEX-P4PP-2526-SM-3P61P
30-39 years, female
403.3
GTEX-ZVT3-2726-SM-5GU5X
60-69 years, female
397.8
GTEX-11GSP-2226-SM-5HL5Q
60-69 years, female
388.8
GTEX-ZYY3-2626-SM-5N9DH
60-69 years, female
384.2
GTEX-131YS-2426-SM-5J2OD
60-69 years, female
377.5
GTEX-QDT8-2526-SM-48TYX
30-39 years, female
377.0
GTEX-ZTPG-2226-SM-57WF9
20-29 years, female
375.9
GTEX-ZYVF-0326-SM-5GIES
50-59 years, female
373.9
GTEX-13OVI-0926-SM-5J1MI
60-69 years, female
366.1
GTEX-S4UY-1326-SM-4AD4X
40-49 years, female
366.0
GTEX-ZAJG-2926-SM-5HL8P
50-59 years, female
357.4
GTEX-TSE9-2526-SM-4DXUS
60-69 years, female
352.4
GTEX-ZQG8-1126-SM-51MRL
60-69 years, female
351.3
GTEX-13QIC-1826-SM-5J1MY
60-69 years, female
350.1
GTEX-131XG-2126-SM-5DUXG
50-59 years, female
347.9
GTEX-NL3G-2526-SM-4SOIE
60-69 years, female
347.2
GTEX-12ZZX-1926-SM-5EGKC
40-49 years, female
346.4
GTEX-TMMY-1926-SM-4DXUU
40-49 years, female
342.6
GTEX-RWS6-1726-SM-47JXP
60-69 years, female
338.0
GTEX-P78B-2226-SM-3P5ZZ
40-49 years, female
334.8
GTEX-T6MO-1226-SM-4DM5S
40-49 years, female
331.5
GTEX-S4P3-1126-SM-4AD52
50-59 years, female
330.5
GTEX-147F3-1526-SM-5SIAK
50-59 years, female
328.4
GTEX-1399U-1526-SM-5J2N7
50-59 years, female
326.7
GTEX-ZC5H-2226-SM-4WAWS
40-49 years, female
326.7
GTEX-ZXES-0626-SM-5E45P
30-39 years, female
320.0
GTEX-N7MT-1926-SM-3LK5N
60-69 years, female
319.6
GTEX-OHPK-2526-SM-3MJH9
50-59 years, female
317.3
GTEX-13U4I-2026-SM-5LU3L
40-49 years, female
316.9
GTEX-146FR-2426-SM-5NQAU
60-69 years, female
314.1
GTEX-11TTK-2726-SM-5GU58
60-69 years, female
313.4
GTEX-QCQG-1226-SM-48U23
50-59 years, female
312.6
GTEX-SE5C-1126-SM-4BRWZ
40-49 years, female
312.2
GTEX-14DAQ-2326-SM-5S2QX
60-69 years, female
310.3
GTEX-PX3G-2526-SM-48TZV
20-29 years, female
309.6
GTEX-X15G-1926-SM-4PQZQ
50-59 years, female
309.0
GTEX-S7SF-1426-SM-4AT5A
20-29 years, female
307.5
GTEX-ZLWG-1126-SM-4WWFQ
50-59 years, female
307.3
GTEX-ZV6S-1326-SM-59HJA
40-49 years, female
307.3
GTEX-13PVR-1426-SM-5S2PW
60-69 years, female
307.1
GTEX-11DXX-1726-SM-5H11T
60-69 years, female
304.7
GTEX-132AR-1626-SM-5EGHP
50-59 years, female
302.8
GTEX-12WSD-2926-SM-5LZUH
60-69 years, female
300.6
GTEX-113JC-1926-SM-5N9GE
50-59 years, female
299.0
GTEX-XUJ4-1626-SM-4BONV
60-69 years, female
296.7
GTEX-Q734-1426-SM-48TZQ
40-49 years, female
293.4
GTEX-T2IS-1926-SM-4DM74
20-29 years, female
292.1
GTEX-WEY5-0826-SM-4LMIH
40-49 years, female
289.9
GTEX-PWOO-2026-SM-48TDE
40-49 years, female
289.2
GTEX-11EMC-1926-SM-5A5JU
60-69 years, female
288.7
GTEX-X8HC-2826-SM-46MWJ
50-59 years, female
286.8
GTEX-ZZPU-2226-SM-5EGIV
50-59 years, female
285.0
GTEX-ZYWO-2026-SM-5GIDA
40-49 years, female
282.7
GTEX-12WSB-2426-SM-5EGJC
60-69 years, female
281.8
GTEX-14AS3-1726-SM-5RQJV
40-49 years, female
280.9
GTEX-13PL7-2726-SM-5L3GB
60-69 years, female
280.2
GTEX-W5WG-1026-SM-4LMIF
50-59 years, female
279.8
GTEX-XUW1-0326-SM-4BOOR
50-59 years, female
279.2
GTEX-YFC4-2926-SM-5IFJ8
40-49 years, female
278.8
GTEX-Y3IK-2226-SM-4YCD4
50-59 years, female
274.2
GTEX-1399S-2326-SM-5K7YV
30-39 years, female
273.2
GTEX-146FH-2626-SM-5Q5E1
50-59 years, female
270.1
GTEX-13N11-1526-SM-5L3FL
50-59 years, female
269.5
GTEX-145ME-1426-SM-5RQJS
40-49 years, female
268.2
GTEX-Y114-1926-SM-4TT8J
50-59 years, female
267.2
GTEX-WRHU-2926-SM-4MVNQ
50-59 years, female
267.1
GTEX-ZP4G-0826-SM-4WWF3
20-29 years, female
265.5
GTEX-OHPL-2526-SM-3MJGT
60-69 years, female
264.5
GTEX-13W3W-2326-SM-5LU4Y
60-69 years, female
263.9
GTEX-11XUK-1326-SM-5EQM4
40-49 years, female
261.8
GTEX-11EM3-1826-SM-5A5KO
20-29 years, female
259.1
GTEX-ZGAY-2226-SM-4YCCX
40-49 years, female
255.2
GTEX-XV7Q-1626-SM-4BRWC
40-49 years, female
254.7
GTEX-11I78-2026-SM-5987C
50-59 years, female
253.4
GTEX-YJ8O-1226-SM-5P9JE
40-49 years, female
251.3
GTEX-ZVT2-0626-SM-5GICR
50-59 years, female
248.2
GTEX-QVJO-2526-SM-4R1KB
60-69 years, female
246.6
GTEX-14BMU-1926-SM-5S2QC
20-29 years, female
246.4
GTEX-14A5I-2726-SM-5SIB3
50-59 years, female
241.6
GTEX-TML8-1126-SM-4DXSS
40-49 years, female
239.7
GTEX-13QBU-1726-SM-5IJFQ
40-49 years, female
237.8
GTEX-12WSJ-1326-SM-5GCOB
40-49 years, female
232.3
GTEX-U3ZN-0926-SM-4DXTU
30-39 years, female
223.3
GTEX-UJHI-1326-SM-4IHJO
50-59 years, female
218.9
GTEX-UPIC-1426-SM-4IHLQ
20-29 years, female
218.5
GTEX-PWCY-1726-SM-48TD3
20-29 years, female
217.0
GTEX-S341-1226-SM-4AD5S
40-49 years, female
213.4
GTEX-PWN1-2526-SM-48TDS
40-49 years, female
206.2
GTEX-RU1J-1426-SM-46MUV
20-29 years, female
202.2
GTEX-11VI4-0726-SM-5GU5B
40-49 years, female
186.5
Show all
VAGINA - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.