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The protein expression bar, with the units not detected (n), low (l), medium (m) and high (h), is based on a best estimate of the true protein expression for proteins where the antibody staining pattern has been analyzed by knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. For details, see Assays & annotation.
h
m
l
n
RNA expressioni
RNA expression shows average values based on RNA-seq data generated by HPA, the Genotype-Tissue Expression (GTEx) consortium or the FANTOM5 consortium.
The detailed normal tissue page shows images of the stained tissue, together with antibody staining and expression level of the cell types. A knowledge-based annotated protein expression is provided for each cell type at the top of the page and the staining level of the individual antibodies is given underneath each antibody ID.
Samples from up to three different individuals have been stained for each antibody. The gender, age and tissue characterization are reported for each individual (patient) and are viewable when clicking on the image for magnification.
The images can be clicked for an enlarged view that can be panned. From the enlarged view, all stained images for all antibodies can be browsed (represented by miniature images). The miniature image with an orange overlay is the currently displayed image.
This score describes the level of antibody staining observed in the annotated cell types as not detected, low, medium, or high. It is based on the staining intensity and fraction of stained cells.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
RNA-Seq data is reported as average RPKM (reads per kilobase per million mapped reads), generated by the Genotype-Tissue Expression (GTEx) project. More information can be found on the GTEx portal.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. RPKM values of the individual samples are presented next to the box plot.
Max RPKM: 429.6
Min RPKM: 124.0
Std RPKM: 71.0
Median RPKM: 223.0
GTEX-WRHK-1026-SM-4MVOD
20-29 years, female
429.6
GTEX-11VI4-1626-SM-5EQKO
40-49 years, female
423.6
GTEX-148VJ-2226-SM-5NQ9M
70-79 years, male
399.3
GTEX-X15G-1426-SM-4PQZK
50-59 years, female
381.4
GTEX-VUSG-1726-SM-4KKZL
50-59 years, male
373.2
GTEX-13O61-1326-SM-5KM31
60-69 years, male
366.6
GTEX-11NSD-1726-SM-5N9C3
20-29 years, male
355.4
GTEX-1399U-2126-SM-5IFEZ
50-59 years, female
354.3
GTEX-Y5LM-1626-SM-4VDTB
40-49 years, female
346.1
GTEX-WH7G-1626-SM-4LVMY
40-49 years, male
340.7
GTEX-11XUK-1426-SM-5EQMG
40-49 years, female
324.9
GTEX-ZLFU-1526-SM-4WWBT
40-49 years, male
323.9
GTEX-13FH7-1226-SM-5IJFK
50-59 years, female
318.3
GTEX-WFJO-0926-SM-4LVM2
30-39 years, male
317.7
GTEX-131XG-1726-SM-5LZUR
50-59 years, female
310.3
GTEX-145ME-0926-SM-5O9AR
40-49 years, female
292.2
GTEX-Y3IK-1726-SM-4YCCR
50-59 years, female
290.2
GTEX-11P82-0826-SM-5P9GU
20-29 years, male
288.5
GTEX-VJYA-0926-SM-4KL1N
60-69 years, male
281.9
GTEX-12BJ1-1926-SM-5HL9Z
60-69 years, male
276.9
GTEX-13QBU-1926-SM-5IJEW
40-49 years, female
273.4
GTEX-ZEX8-1826-SM-57WBH
50-59 years, male
272.2
GTEX-ZC5H-2326-SM-4WAYT
40-49 years, female
271.3
GTEX-13113-1226-SM-5EGHT
60-69 years, female
269.5
GTEX-139T6-1026-SM-5IJGC
50-59 years, male
269.4
GTEX-13RTK-0826-SM-5Q5C6
20-29 years, male
269.0
GTEX-1192X-2526-SM-59868
50-59 years, male
266.9
GTEX-14E6E-1626-SM-5RQI7
30-39 years, male
264.7
GTEX-UPK5-2026-SM-4JBIM
40-49 years, male
259.0
GTEX-ZVP2-1726-SM-5GU5P
50-59 years, male
258.5
GTEX-Z9EW-0926-SM-5CVMM
40-49 years, male
257.6
GTEX-139YR-2226-SM-5IFFW
50-59 years, male
257.4
GTEX-ZTPG-2626-SM-57WFX
20-29 years, female
253.8
GTEX-XGQ4-1326-SM-4GIDU
50-59 years, male
245.0
GTEX-117YX-0326-SM-5GICL
50-59 years, male
244.7
GTEX-ZA64-1226-SM-5HL7B
20-29 years, male
242.5
GTEX-WEY5-1526-SM-4LMJF
40-49 years, female
242.3
GTEX-ZXES-1526-SM-5NQ95
30-39 years, female
240.0
GTEX-ZQG8-2526-SM-57WEQ
60-69 years, female
239.4
GTEX-ZP4G-1626-SM-57WGD
20-29 years, female
235.6
GTEX-13111-1426-SM-5DUW3
50-59 years, male
235.0
GTEX-13OVI-1926-SM-5IJCG
60-69 years, female
232.6
GTEX-ZYWO-1526-SM-5SIAL
40-49 years, female
227.3
GTEX-11I78-1126-SM-5A5K5
50-59 years, female
223.0
GTEX-ZZ64-0526-SM-5GZXM
20-29 years, male
223.0
GTEX-12WSK-1526-SM-5CVNO
40-49 years, female
221.6
GTEX-1399S-2026-SM-5KM4B
30-39 years, female
219.9
GTEX-ZPIC-2326-SM-57WDW
40-49 years, female
215.2
GTEX-Y114-1426-SM-4TT6W
50-59 years, female
212.1
GTEX-ZVT2-2126-SM-5NQ93
50-59 years, female
208.3
GTEX-131XF-1326-SM-5GCMQ
60-69 years, male
207.3
GTEX-ZF2S-1726-SM-57WFT
50-59 years, female
206.6
GTEX-XMK1-1826-SM-4B66F
40-49 years, male
206.4
GTEX-ZQUD-0926-SM-57WE3
30-39 years, male
206.4
GTEX-11DXZ-1326-SM-5H11X
50-59 years, male
206.1
GTEX-WFG8-1626-SM-4LVMB
20-29 years, male
205.9
GTEX-X5EB-1626-SM-4E3IV
40-49 years, male
204.8
GTEX-WFG7-1726-SM-4LVME
20-29 years, male
201.9
GTEX-1399R-2026-SM-5K7WN
30-39 years, male
200.6
GTEX-11EQ9-1326-SM-5985X
30-39 years, male
199.9
GTEX-13CF3-1226-SM-5LZXN
60-69 years, female
198.7
GTEX-ZYFG-2026-SM-5E43Y
60-69 years, female
196.8
GTEX-YB5E-1526-SM-5IFIE
40-49 years, male
195.5
GTEX-11DXX-1626-SM-5H11H
60-69 years, female
194.4
GTEX-133LE-1426-SM-5IFH1
20-29 years, female
183.2
GTEX-XAJ8-0526-SM-47JYK
40-49 years, male
181.6
GTEX-XXEK-1026-SM-4BRUW
50-59 years, male
179.6
GTEX-XUZC-1426-SM-4BRV3
30-39 years, female
178.2
GTEX-11P7K-1626-SM-5GU63
30-39 years, male
177.3
GTEX-14DAR-1426-SM-5RQIR
50-59 years, male
176.8
GTEX-13O21-1026-SM-5IJDU
50-59 years, male
172.9
GTEX-XBED-1426-SM-4AT4G
60-69 years, male
168.3
GTEX-YEC4-1726-SM-4W21E
40-49 years, male
167.7
GTEX-145LT-1026-SM-5LU9O
40-49 years, male
166.5
GTEX-ZTX8-0526-SM-59HLD
20-29 years, male
166.0
GTEX-111CU-1326-SM-5NQ8L
50-59 years, male
163.4
GTEX-13D11-0726-SM-5LZZB
50-59 years, female
163.0
GTEX-13PL7-2626-SM-5IFH4
60-69 years, female
156.1
GTEX-ZLV1-1126-SM-4WWBW
60-69 years, female
154.0
GTEX-13FTW-2026-SM-5IJE2
40-49 years, male
143.7
GTEX-WQUQ-2426-SM-4MVNW
60-69 years, male
142.3
GTEX-ZPCL-1726-SM-57WEO
60-69 years, female
139.9
GTEX-ZTSS-0926-SM-59865
40-49 years, male
137.2
GTEX-1122O-1326-SM-5H11F
60-69 years, female
133.4
GTEX-ZVZP-1826-SM-5GZXB
50-59 years, male
133.3
GTEX-Y9LG-1626-SM-5IFHM
30-39 years, male
132.7
GTEX-YF7O-1826-SM-5IFIU
50-59 years, male
124.8
GTEX-111YS-1426-SM-5GID8
60-69 years, male
124.0
Show all
SMALL INTESTINE - FANTOM5 CAGEi
Tissue data obtained through Cap Analysis of Gene Expression (CAGE) are reported as Tags Per Million, generated by the FANTOM5 project. More information can be found here.